Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq10380 104 2e-17 seq8319 98.7 8e-16 >seq10380 Length=37184 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||| | || || || || ||| | || || || ||||| || || ||| ||||| Sbjct 12257 ATGGCACTACCGCCGTGCCACATGTTTTGTCAGTTCTACGTGGCGGATGGCGAACTGTCG 12316 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 |||||||||||||| || || || |||||||| ||||| || || ||||| || || ||| Sbjct 12317 TGTCAAATGTATCAGCGTTCGGCCGATATGGGGCTGGGCGTACCCTTCAACATCGCTAGT 12376 Query 20521 TATGCGCTGCTTACG 20535 || |||||||||||| Sbjct 12377 TACGCGCTGCTTACG 12391 >seq8319 Length=37522 Score = 98.7 bits (108), Expect = 8e-16 Identities = 213/319 (67%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 20217 GGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGA 20276 ||| ||| |||| || || || || || || ||| | ||||| ||||| | || || Sbjct 10310 GGGCGATCTGGGGCCGGTTTACGGCTTCCAGTGGCGCCATTTCGGAGCCAAGTACACGGA 10251 Query 20277 CATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAAT 20336 |||| || | |||| ||| ||||| || || ||| | | || ||| | | Sbjct 10250 CATGCACGCTGATTACACTGGTCAAGGCGTGGACCAACTGGCCGAAGTCATTCAGAAGCT 10191 Query 20337 TAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 |||||| || | |||| | | || | | | ||| |||||| | ||| || Sbjct 10190 ACGAACGAATCCGAGCGACCGTCGGATCGTGCTTTCCGCTTGGAACCCGGCGGATCTGAA 10131 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATT 20456 ||||| |||| || || || ||| | ||||| || ||||| || | || | Sbjct 10130 CGAGATGGCGCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCGGACGGCGAGCT 10071 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||||||||||||||| || || || || |||||||| ||||| || || ||||| || || Sbjct 10070 GTCGTGTCAAATGTACCAGCGTTCGGCCGATATGGGGCTGGGCGTACCCTTCAACATCGC 10011 Query 20517 AAGTTATGCGCTGCTTACG 20535 ||||| |||||||| ||| Sbjct 10010 CAGTTACGCGCTGCTCACG 9992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399126100980445