Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq10380 149 1e-30 >seq10380 Length=37184 Score = 149 bits (164), Expect = 1e-30 Identities = 434/661 (66%), Gaps = 8/661 (1%) Strand=Plus/Plus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || || || || ||| ||||| | ||||| |||| ||| | ||| | | || || | Sbjct 11837 ACGGGCACCGGGACTTTATCCGTCTTTGGCGCCCAGATGCGCTTCAATTTGCGGGATAAT 11896 Query 35219 ACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCG 35278 |||| | ||||| |||||| | |||||| | || || | || || |||| | Sbjct 11897 GTGTTTCCTCTGCTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCTGAGGAGCTCTTG 11956 Query 35279 TGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGC--CAAGAAGAAGATACACATCT 35336 |||||||| || ||| | || |||| | | | || ||| ||| | || ||||||| Sbjct 11957 TGGTTCATTAGCGGCGACACGAACGC-AGCCACGTTGCAGCAA-AAGGACATCCACATCT 12014 Query 35337 GGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGG 35396 || ||| || || ||||| || | | |||||||| ||||| | | | | | | | || Sbjct 12015 GGGACGGCAACGGATCGCGTGAGTATCTGGACAGTCGAGGGCTTCAAGCTCGGGAAACGG 12074 Query 35397 GAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGC--TGAATATGATAC 35454 | ||| |||| || || ||||| ||||||||||||||||| || || | | | || || Sbjct 12075 GCGATCTGGGGCCGGTCTACGGCTTCCAATGGCGTCATTTCGGGGCCAAGTACACGA-AC 12133 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 || | | ||||| ||||| | || | || ||| |||| | | | ||| || Sbjct 12134 ATGCAC-GCTGATTACACTGGCCAAGGCGTGGACCAACTGGCTGAAGTCATTCAGAAGCT 12192 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574 || ||||| || | | || | | | || ||||| || |||||| | Sbjct 12193 ACGAACGAATCCGAGCGACCGTCGCATCGTGCTTTCCGCTTGGAACCCGGCGGATCTGAA 12252 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATT 35634 | ||||| || || || ||||||||| | ||| || || ||||| |||| ||| | Sbjct 12253 CGAGATGGCACTACCGCCGTGCCACATGTTTTGTCAGTTCTACGTGGCGGATGGCGAACT 12312 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||||| || |||||||||| | ||| | ||| ||||||| |||||||| || || Sbjct 12313 GTCGTGTCAAATGTATCAGCGTTCGGCCGATATGGGGCTGGGCGTACCCTTCAACATCGC 12372 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754 ||| | || || || || ||||| ||| || || | || || ||||| Sbjct 12373 TAGTTACGCGCTGCTTACGAGACTCGTGGCCCAAGTGGCTGGCCTGCAGCCCGGCGAGTT 12432 Query 35755 TATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCA 35814 ||||| | |||||||||| ||| | ||| | |||| | ||| | || || |||| Sbjct 12433 TATCCACGTCATTGGTGACGCCCACGTGTATCTGAACCACGTGGAGCCGCTACAGCAGCA 12492 Query 35815 G 35815 | Sbjct 12493 G 12493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989433106685455