Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq8319 192 5e-44 seq10380 178 1e-39 >seq8319 Length=37522 Score = 192 bits (212), Expect = 5e-44 Identities = 433/637 (68%), Gaps = 18/637 (3%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 || ||||| || || |||| | ||||| || |||| || || |||||||| || Sbjct 9864 GGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTTCAGATAC 9923 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 ||||||||||| || | | ||| | || ||||| || |||||| | || || || Sbjct 9924 ACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCACTTGGGCC 9983 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 | || ||| || || ||||| ||||||||||| || || || || || ||||| ||| Sbjct 9984 ACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCCCATATCG 10043 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | |||||||| || || |||||||| || |||||||| ||||| || || Sbjct 10044 GCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTGGCAGAAC 10103 Query 21129 ACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || || || |||||| || | || ||||| |||||||| ||| | | || Sbjct 10104 ATGTGGCACGGCGGCAGCGCCATCTCGTTC-AGATCCGCCGGGTTCCAAGCGGAAAGCAC 10162 Query 21188 GATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCC---ACCACGTAACGCAGCTGGTC 21244 ||| || || ||| || | ||| ||| | | | || | ||| ||||| Sbjct 10163 GATCCGACGGTCGCTCGGATTC--GTT-CGTAGCTTCTGAATGACTTCGGCCAGTTGGTC 10219 Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304 ||| || ||||| ||| | |||| || |||||| || || ||||| | ||| Sbjct 10220 CACGCCTTGACCAGTGTAATCAGCGTGCATGTCCGTGTACTTGGCTCCGAAATGGCGCCA 10279 Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGCCC-TCGCGGCGGTCCCCGAAGCCCTGCGCCG 21363 |||||| ||||| |||||||||||||||||| | | | | | |||||||| | | Sbjct 10280 CTGGAAGCCGTAAACCGGCCCCAGATCGCCCGTTTC--CCGAGCTTGAAGCCCTCGACTG 10337 Query 21364 -CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG--CCGCGGC-GCGACAGT 21419 ||| | | | || || |||| ||||||| || | | | | | || || || || Sbjct 10338 TCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAAC-GT 10396 Query 21420 TCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAA 21479 || | || ||| ||| || || ||||||| | |||||| | ||||| | ||| Sbjct 10397 --GGCTGCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCGCGCCAG 10454 Query 21480 AACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCC 21516 ||||| | ||||| || | |||||||||| | |||| Sbjct 10455 AACACGCGCTTGGTCGTGAGCAGAGGAAACACATCCC 10491 >seq10380 Length=37184 Score = 178 bits (196), Expect = 1e-39 Identities = 421/627 (67%), Gaps = 12/627 (2%) Strand=Plus/Minus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 || ||||| || || |||| | ||||| || | || || || |||||||| || Sbjct 12519 GGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGTAGCGGCTCCACGTGGTTCAGATAC 12460 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 |||||||||||||| | | ||| | ||| || || || |||||| | || || || Sbjct 12459 ACGTGGGCGTCACCAATGACGTGGATAAACTCGCCGGGCTGCAGGCCAGCCACTTGGGCC 12400 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 | || ||| || || ||||| || |||||||| || || || || || ||||| ||| Sbjct 12399 ACGAGTCTCGTAAGCAGCGCGTAACTAGCGATGTTGAAGGGTACGCCCAGCCCCATATCG 12340 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | ||| |||| || || ||||| || || |||||||| |||||||| || Sbjct 12339 GCCGAACGCTGATACATTTGACACGACAGTTCGCCATCCGCCACGTAGAACTGACAAAAC 12280 Query 21129 ACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || || || |||||| || | || ||||| |||||||| ||| | | || Sbjct 12279 ATGTGGCACGGCGGTAGTGCCATCTCGTTC-AGATCCGCCGGGTTCCAAGCGGAAAGCAC 12221 Query 21188 GATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCC---ACCACGTAACGCAGCTGGTC 21244 |||||| || ||| || | ||| ||| | | | || | | ||| ||||| Sbjct 12220 GATGCGACGGTCGCTCGGATTC--GTT-CGTAGCTTCTGAATGACTTCAGCCAGTTGGTC 12164 Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304 ||| || || || ||| | |||| | |||||| ||||| ||||| | ||| Sbjct 12163 CACGCCTTGGCCAGTGTAATCAGCGTGCATGTTCGTGTACTTGGCCCCGAAATGACGCCA 12104 Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGCCC-TCGCGGCGGTCCCCGAAGCCCTGCGCCG 21363 ||||| ||||| |||||||||||||||||| | | | | | |||||||| | | Sbjct 12103 TTGGAAGCCGTAGACCGGCCCCAGATCGCCCGTTTC--CCGAGCTTGAAGCCCTCGACTG 12046 Query 21364 -CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCG 21422 ||| | | | || || |||| ||||||| || | | | | || || | Sbjct 12045 TCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTTTGCTGCAACGTG 11986 Query 21423 GTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAAC 21482 | | || ||| ||| || || ||||||| | |||||| | ||||| | ||| ||| Sbjct 11985 GCTGCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCGCGCCAGAAC 11926 Query 21483 ACCCTTTTGGTGGTTAACAGAGGAAAC 21509 || | ||||| || | |||||||||| Sbjct 11925 ACGCGCTTGGTCGTGAGCAGAGGAAAC 11899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427713953898480