Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1363 104 2e-17 seq8868 100 2e-16 seq6551 91.5 1e-13 seq2060 89.7 4e-13 seq4754 84.2 2e-11 >seq1363 Length=31850 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||| | |||||||| ||||| || |||||| || | || || || || ||| |||| Sbjct 9772 CGTTTGTTGGCCTTCGCGGCCGTGGAAGGCATCTTCTTCTCCGGCTCCTTTTGCTCCATC 9831 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||||||||| || |||||||| || | || ||||||||| |||| || Sbjct 9832 TTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGATCAGT 9891 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 ||||||||||| | ||||| |||||||| || Sbjct 9892 CGTGACGAAGGCATGCACTGCGACTTTGCCTG 9923 >seq8868 Length=43550 Score = 100 bits (110), Expect = 2e-16 Identities = 116/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 33571 CCAGAGATGGGCGACAAGTTT-GCA-TCGTTCACGGCCCAGAAGGGCACGTGCGGCATGA 33628 || ||||| ||||||||||| ||| ||| ||||||| |||||||| |||||||| | Sbjct 2005 CCGGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGCC-AGAAGGGCGTGTGCGGCACCA 2062 Query 33629 TGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCA 33688 | | ||||| ||||||||||||| | | | |||||| |||||||| |||| | Sbjct 2063 TCCGCAACCAGGAAGACATGCCGTTCAACGACCAGGGCGTGTGTCCGGACCTGATCATGA 2122 Query 33689 ACCCGCATGCGTTCCCCTCGCGCATGACGGT 33719 ||||||| | ||||||| ||||||||||| Sbjct 2123 ACCCGCACGGGTTCCCCAGTCGCATGACGGT 2153 >seq6551 Length=15111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 33571 CCAGAGATGGGCGACAAGTTT-GCA-TCGTTCACGGCCCAGAAGGGCACGTGCGGCATGA 33628 || ||||| ||||||||||| | | ||| ||||||| |||||||| |||||| | | Sbjct 2005 CCGGAGATCGGCGACAAGTTCAGTAGTCGC-CACGGCC-AGAAGGGCGTGTGCGGTACCA 2062 Query 33629 TGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCA 33688 | | ||||| ||||||||||||| | | | |||||| |||||||| |||| | Sbjct 2063 TCCGCAACCAGGAAGACATGCCGTTCAACGACCAGGGCGTGTGTCCGGACCTGATCATGA 2122 Query 33689 ACCCGCATGCGTTCCCCTCGCGCATGACGGT 33719 ||||||| | ||||||| ||||||||||| Sbjct 2123 ACCCGCACGGGTTCCCCAGTCGCATGACGGT 2153 >seq2060 Length=42285 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCATATTCTGG 22806 |||| || ||||| || |||||| || | || || || || || ||| |||| |||||| Sbjct 32535 TGGCGTTCGCGGCCGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCT-CCATCTTCTGG 32477 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 |||||||| || |||||||| || | || ||||||||| |||| || |||||| Sbjct 32476 CTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGATCAGTCGTGAC 32417 Query 22867 GAAGGTCTACACTGTGACTTTGCTTG 22892 ||||| | ||||| ||||| || || Sbjct 32416 GAAGGCATGCACTGCGACTTCGCCTG 32391 >seq4754 Length=3367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 33556 CGCAAGATACGCATACCAGAGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGG 33614 ||||| || || || || |||| || |||||||| || ||| |||||| | ||||||| Sbjct 1244 CGCAACATCCGTATCCCGCAGATTGGTGACAAGTTCGCGTCGCGTCACGGAC-AGAAGGG 1186 Query 33615 CACGTGCGGCATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCC 33674 ||| || |||| |||| |||| ||||||||||||||||| ||| ||| | || Sbjct 1185 TACGATTGGTATGACGTACCGCCAGGAGGACATGCCGTTCACGGTCGAAGGCATCACGCC 1126 Query 33675 GGACCTAGTCATCAACCCGCATGCGTTCCCCTCGCGCATGACGGT 33719 || | | | |||||||| || | || ||||| ||||| || Sbjct 1125 CGATATCATTGTGAACCCGCACGCCATTCCGTCGCGTATGACCGT 1081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356181930654103