Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2060 87.8 4e-12 seq1363 84.2 5e-11 >seq2060 Length=42285 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || || || || || ||||| || ||||| ||||| || || | | ||||| ||| || Sbjct 32533 GCGTTCGCGGCCGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTG 32474 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 ||||| | ||||| ||||| || | | ||||| ||||| |||| || | |||||| Sbjct 32473 AAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGATCAGTCGTGACGAA 32414 Query 269261 GGTTTACACTGCGACTTCGCTTG 269283 || | |||||||||||||| || Sbjct 32413 GGCATGCACTGCGACTTCGCCTG 32391 >seq1363 Length=31850 Score = 84.2 bits (92), Expect = 5e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 269134 GTTAGTTG-CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCT 269192 ||| |||| | || || || || ||||| || ||||| || || || ||| | | |||| Sbjct 9773 GTTTGTTGGCCTTCGCGGCCGTGGAAGGCATCTTCTTCTCCGGCTCCTTTTGCTCCATCT 9832 Query 269193 TTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCA 269252 | ||| ||||||| | ||||| ||||| || | | ||||| ||||| |||| || Sbjct 9833 TCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGATCAGTC 9892 Query 269253 GGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 | |||||||| | ||||||||||| || || Sbjct 9893 GTGACGAAGGCATGCACTGCGACTTTGCCTG 9923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151222832972908