Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq10671 100 2e-16 seq11606 96.9 3e-15 >seq10671 Length=26616 Score = 100 bits (110), Expect = 2e-16 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 5687 ATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACG 5746 || ||||| || ||| ||||||||| | ||||| ||||||||||||||| || |||||| Sbjct 652 ATGACGCCGGCACCCGTGTCGATGAACTTCTTGAGCGCCAGGCCGGAGCGCGGCGCCACG 593 Query 5747 CGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCC-GACC 5805 ||| ||||||| || ||||||||| || || ||| || |||| |||| || Sbjct 592 CGGGCGTAGCAGCCGTCGGGAAGCGCGATGGCCAAGTCAGTCTTGACCA-GCGCCTTGCC 534 Query 5806 GCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGCCCGCGGGGA 5865 ||| || |||| || | |||| | |||||| || || | ||||| ||| | ||| Sbjct 533 GCCGGCGGGGATGACGGCGTCGTAGGCGCTGGCCAGATCCAAGCCGGCGGCCAGACTGGA 474 Query 5866 CCCCCTGGTGGGGAGCGTGGCGTTGG 5891 ||| | || || || |||| |||| Sbjct 473 CCCGCGAGTCGGCAGGATGGC-TTGG 449 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 |||||||||| ||||| ||||| ||||| | |||| ||||| | |||||||| Sbjct 930 CACGCCCGTGCTGCCGAAGCCGCCAGCGCCGCGGACCGTCTCGTCGATCTCGGCCACCTC 871 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 || || ||| || | ||| |||||| || || | ||||||||| ||| | Sbjct 870 CAGTACCTCCGGGTACTCGATCTTCTCCAAGATCAATTGGGCCACTCGGTCGCCGCGT-T 812 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || |||||| | | || |||||| || | ||||||||||||||||||||||| Sbjct 811 TCACGGTGAAATCCTCGCTCGCGTGGTTGAAGAGGATCACGCCCACGTTGCCGCGGTAGT 752 Query 5679 CGGCGTCTAT 5688 |||||||||| Sbjct 751 CGGCGTCTAT 742 >seq11606 Length=8067 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 5687 ATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACG 5746 || ||||| |||||| ||||||||| | ||||| ||||||||||||||| ||||||||| Sbjct 3778 ATGACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCGGAGCGCGGAGCCACG 3719 Query 5747 CGGCCGTAGCACCCATCGGGAAG 5769 ||| ||||||| || ||||| || Sbjct 3718 CGGGCGTAGCAGCCGTCGGGTAG 3696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429992023431512