Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq8319 147 1e-30 >seq8319 Length=37522 Score = 147 bits (162), Expect = 1e-30 Identities = 349/520 (67%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 25382 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATC 25441 ||| ||||| || || | ||| || | |||||| || |||||| || ||||| | Sbjct 9857 CAGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTT 9916 Query 25442 CAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAAC 25501 ||| || ||||| ||||| || | ||||| |||||||| || | || || | || Sbjct 9917 CAGATACACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCAC 9976 Query 25502 GTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCC 25561 | |||| | |||||| || ||| ||||||||||| |||||||| || | ||| Sbjct 9977 TTGGGCCACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCC 10036 Query 25562 CATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACT 25621 ||| | | |||| | |||||| | |||||||| ||||| |||| |||||| |||| Sbjct 10037 CATAT-CGGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACT 10095 Query 25622 GACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGC 25681 | || | ||| |||||| || || || || | || || |||||||| ||| Sbjct 10096 GGCAGAACATGTGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGG 10155 Query 25682 ACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTG--CAG 25739 | | | ||| | | ||| || || | || | || || | || | ||| Sbjct 10156 AAAGCACGATCCGACGGTC-GCTCGGAT-TCGTTCGTAGCTTCTGAATGACTTCGGCCAG 10213 Query 25740 CTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATA 25799 || ||||| || || | ||| || || |||||||||||||| |||||||||| Sbjct 10214 TTGGTCCACGCCTTGACCAGTGTAATCAGCGTGCATGTCCGTGTACTTGGCTCCGAAATG 10273 Query 25800 CCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC-C 25858 | ||||||||| ||||| ||||| || || || || ||||| | ||| |||||| | Sbjct 10274 GCGCCACTGGAAGCCGTAAACCGGCCCCAGATCGCCCGTTTCCC-GAGCTTGAAGCCCTC 10332 Query 25859 TCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGAT 25898 | |||| | | || | || || ||| |||||||||| Sbjct 10333 GACTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGAT 10372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340088265273273