Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10994 95.1 1e-14 seq1233 82.4 6e-11 >seq10994 Length=1377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | || || |||||||||||||||| ||| || | | Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| || ||| | | |||||||||| ||||||||||||| | Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 1295 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | || | | |||| || | || ||||| || || || || || ||||||| Sbjct 1296 CAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAA 1355 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 1356 AGATCTGCAT 1365 >seq1233 Length=22992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || | || || ||||||||||||| Sbjct 354 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGACCGTCCTCCAGCTG 412 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || ||| | | |||||||| ||||| Sbjct 413 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTT 472 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 |||||| | | | || || | || | || |||| || | || || || || || Sbjct 473 CTGCTTCACGTTGTCG--ATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCA 530 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || ||||||||| || Sbjct 531 GTGAGGGTCTTCACGAAGATCTGCATCTTG 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421190100277901