Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq7685 113 4e-20 seq8240 95.1 1e-14 >seq7685 Length=38586 Score = 113 bits (124), Expect = 4e-20 Identities = 163/227 (72%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 94188 CCCCGCGCCGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCT 94247 |||| || ||||| || ||| |||||| ||||||||||| || |||| |||| | Sbjct 37676 CCCCACGACGCACCGTGAGCACCGTGTTGAGCAGCAGCACGCCTTGGCGGCTCCAGTCGG 37735 Query 94248 CCAGGCAGCCGTGGGCGGGCGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAG 94306 ||| |||||||| | |||| || ||| | | ||||||| | | || || |||| Sbjct 37736 ACAGACAGCCGTGCGAGGGC-CGCGCAATGCCC---ACGTCGCTCATGGCCTCCTTGAAG 37791 Query 94307 ATGTTGGCCAGGCTCGGGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGG 94366 ||||| |||||||| ||| |||||| ||| | || || |||| ||| ||||| Sbjct 37792 ATGTTCTTGAGGCTCGGAGGGGGCGGCACGCCGTGTCGCACCGAGAAGCTCAGGCCGTGC 37851 Query 94367 GCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTT 94413 ||||| ||||||||||||||| ||||| || | || ||||| || Sbjct 37852 GCCTGTTGCGGCCCGTGGTACGGATCCTGACCCAAAATCACCACTTT 37898 >seq8240 Length=1080 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 94210 CGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGGCGC 94269 |||||| ||||||||||| || |||| |||| | ||||||||||| | |||| | Sbjct 1070 CGTGTTGAGCAGCAGCACGCCTTGGCGGCTCCAGTCGGATAGGCAGCCGTGCGAGGGC-C 1012 Query 94270 GGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGGGGGA 94328 | ||| | | ||||||| | | || || ||||||||| |||||||| || Sbjct 1011 GCGCAATGCCC---ACGTCGCTCATGGCCTCCTTGAAGATGTTCTTGAGGCTCGGAGGTG 955 Query 94329 TCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTACG 94388 |||||| ||| | || || |||| ||| ||||| ||||| |||||||||||||| Sbjct 954 GCGGCACACCGTGTCGCACCGAGAAGCTCAGGCCGTGCGCCTGCTGCGGCCCGTGGTACG 895 Query 94389 GGTCCTGGCCGATGATGACCACCTT 94413 | ||||| || | || ||||| || Sbjct 894 GATCCTGACCCAAAATCACCACTTT 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458878925867160