Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3760 141 1e-29 seq2141 141 1e-29 seq880 141 1e-29 seq7402 136 6e-28 >seq3760 Length=33447 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 12789 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 12848 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| |||||||| || || |||||| ||||||| || |||| || |||| Sbjct 12849 CCGCCGTCTGGCGCGTCGTGGCGGTGTGAAGCGTATCTCTGGGCTGATCTACGAGGAGAC 12908 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || | || || || || Sbjct 12909 CCGCGGCGTGCTGAAGGTGTTCCTTGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 12968 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| | || || || |||| || || || Sbjct 12969 GCACGCTCGCCGCAAAACGGTGACGGCCATGGACGTGGTGTACGCTCTGAAGCGCCAGGG 13028 Query 16672 CCG 16674 ||| Sbjct 13029 CCG 13031 >seq2141 Length=11237 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 10560 CGCCAAGCGTCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 10619 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| ||||||| || |||| || |||| Sbjct 10620 CCGTCGTCTGGCTCGCCGTGGCGGCGTGAAGCGCATCTCTGGTCTGATCTACGAGGAGAC 10679 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || | || || || || Sbjct 10680 CCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 10739 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| | ||||| || |||| ||||| || Sbjct 10740 GCACGCTCGCCGCAAAACGGTGACGGCCATGGACGTGGTCTACGCGCTGAAGCGTCAGGG 10799 Query 16672 CCG 16674 ||| Sbjct 10800 CCG 10802 >seq880 Length=21978 Score = 141 bits (156), Expect = 1e-29 Identities = 188/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||| ||||| || || Sbjct 21081 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACGAAGCCTGCCAT 21022 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||||||||| || || |||||| ||||||| || |||| || |||| Sbjct 21021 CCGCCGTCTGGCTCGTCGTGGCGGTGTGAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 20962 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || | || || || || Sbjct 20961 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 20902 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || |||| || || || Sbjct 20901 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTGAAGCGCCAGGG 20842 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 20841 CCGCACGCTGTACGGCTTCGG 20821 >seq7402 Length=37166 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| ||||| || |||||||| || ||||||||||| || || Sbjct 23943 CGCCAAGCGTCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 24002 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| ||||||| | |||| || |||| Sbjct 24003 CCGTCGTCTGGCTCGCCGTGGCGGCGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 24062 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || | || || || || Sbjct 24063 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 24122 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| | ||||| || |||| ||||| || Sbjct 24123 GCACGCTCGCCGCAAAACGGTGACGGCCATGGACGTGGTCTACGCGCTGAAGCGTCAGGG 24182 Query 16672 CCG 16674 ||| Sbjct 24183 CCG 24185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064318832393