Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq848 345 1e-89 seq4274 311 2e-79 >seq848 Length=74974 Score = 345 bits (382), Expect = 1e-89 Identities = 891/1349 (66%), Gaps = 15/1349 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||||||||| || ||| ||| || || || | || ||| |||| || Sbjct 17623 TTCACGCACGCCACGCCCACGCTGTTCAACGCCGGCACGCCGCGGCCGCAGCTGTCGTCG 17564 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 17563 TGCTTCCTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAG 17504 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| || ||||| || || | || ||||| | || || Sbjct 17503 TGTGCGTGCATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCC 17444 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | || ||||| | | |||||||| ||| Sbjct 17443 ACCAACAGCTACATCCGCGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGT 17384 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || ||| | ||||| |||||||| || || |||||||| || | || Sbjct 17383 GTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTC 17324 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| || || || || || ||| Sbjct 17323 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAAC 17264 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||||||| || | ||||| |||| | Sbjct 17263 CACGGCAACGAGCTCCACCGCGCGCGCGACCTGTTCTACGCGTTGTGGGTGCCTGATCTG 17204 Query 363967 TTTATGAAGCGCGTGGAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||||||||||| || || ||| ||| || |||||||| ||||| Sbjct 17203 TTCATGAAGCGCGTGGAAGCCAACGGCAAG---TGGAGTCTGTTTTGCCCCAACGAAGCG 17147 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || | || | | | ||||| ||||| | | || || ||||| ||||| || Sbjct 17146 CCGGACCTGTACAAGTGCTGGGGCGACGAGTTCGAGGCGCTGTACGAGAAGTACGAGCGC 17087 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 || || || || ||||| || ||| ||| |||| ||||| |||||| |||| || Sbjct 17086 GAAGGCCGCGCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCG 17027 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| ||||| || |||| ||| ||| ||| || || |||||||||||||||| Sbjct 17026 CAGATCGAGACGGGCGTTCCCTTCATGCTGTTCAAGGACGCGGCCAACCGCAAGTCCAAC 16967 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| |||| || || || | ||||||| | || |||| | || || ||||| Sbjct 16966 CAGCAGAACCTGGGCACCATCCGCTCGAGCAACTTGTGCTGCGAGGTCATGGAGTACACG 16907 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 || ||||| ||| ||||| || ||||| ||||| | ||||| || ||| || || Sbjct 16906 GCGCCCGATGAGGTGGCCGTGTGCAACCTGGCGTCTGTGGCGCTGCCCAAGTTCGTGGAA 16847 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 || || || || || || | || || || || || | | || |||| || Sbjct 16846 GACGGCGTATTCAACTACAAGAAGCTGTACGAGGTCACGAAGGTGGTCACGCGCAACCTG 16787 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCG 364442 ||||||| |||||| || || ||||| | || | || || || || || ||||| Sbjct 16786 AACAAGGTCATCGACGTCAACTACTATCCCGTGCCAG-AGGCGCGCAAGTCCAACATGCG 16728 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 || ||||| | || | ||||||||||| || || |||| || || || | | | Sbjct 16727 CCACCGCCCCGTGGGCATCGGTGTACAGGGACTGGCGGACGCCTTCATCCTGATGGACTT 16668 Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 || || || | || || || | || || ||| | ||||| || || || || | Sbjct 16667 CGCGTTCGAGAGTGCCGAGGCGCGGGAGCTCAACAAGAACATCTTCGAGACCATCTACTA 16608 Query 364563 TGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATG 364621 ||||| || || | | || | | | |||| | ||||| ||| || || | Sbjct 16607 CGCCGCCATGGAGACGTCCATGGAAATCGCCAAAGATGAAGGG-CCCTACGAGACGTACG 16549 Query 364622 AGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 | || |||||| |||| | |||||||| || | ||| || ||||| || | Sbjct 16548 AAGGCTCCCCTGCCAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTGACGCCGTC-G 16490 Query 364682 TC----CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC 364737 || | ||| |||||| | || |||| || | |||| || ||||||| Sbjct 16489 TCGGGTCTCTGGGACTGGGCGGCTCTGAAGGCCAAGGTGGCGCAGCACGGGCTTCGCAAC 16430 Query 364738 TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 || || | ||||| ||||||||||| || || || |||||||| || ||||||||| Sbjct 16429 TCGCTGCTGGTCGCGCCGATGCCCACGGCGTCCACGGCGCAGATCCTGGGCAACAACGAG 16370 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 | |||| |||| || ||| | || ||||| || || | || || || || Sbjct 16369 AGTATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCTGGCGGGCGAGTTCACG 16310 Query 364858 GTAGTTAATAAGTACCTAGTCAAGGATCT 364886 | || || |||||||| | ||||| || Sbjct 16309 ATCGTGAACAAGTACCTGATGAAGGAGCT 16281 >seq4274 Length=4240 Score = 311 bits (344), Expect = 2e-79 Identities = 883/1346 (66%), Gaps = 17/1346 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||||||||| || ||| ||| || || || | || ||| |||| || Sbjct 1339 TTCACGCACGCCACGCCCACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCG 1280 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 1279 TGCTTCCTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAG 1220 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| || ||||| || || | || ||||| | || || Sbjct 1219 TGTGCCTGCATCTCCAAGTGGGCGGGCGGCATCGGCATCAGTATGCACAACATCCGCGCC 1160 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | || ||||| | | |||||||| ||| Sbjct 1159 ACCAACAGCTACATCCGCGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGT 1100 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || ||| | ||||| |||||||| || || |||||||| || | || Sbjct 1099 GTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCTCCTTC 1040 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| | || || || || ||| Sbjct 1039 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCTTGGACCTGCGCAAGAAC 980 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||||||| || | ||||| |||| | | Sbjct 979 CACGGCAACGAGCTCCACCGCGCGCGCGACCTGTTCTACGCGTTGTGGGTGCCTGATCTT 920 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||||||||| || || ||| | || ||||| ||||| || Sbjct 919 TTCATGAAGCGCGTGGAAGCCAACGGCAAATGGAGTTTGTTCTGCCCTAACGAAGCGCCG 860 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 | || | | | ||||| ||||| | | || || ||||| ||||| || || Sbjct 859 GACCTGTACAAATGCTGGGGCGACGAGTTCGAGGCGCTGTACGAGAAGTACGAGCGCGAA 800 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || ||||| || ||| ||| |||| ||||| |||||| |||| ||||| Sbjct 799 GGCCGCGCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAG 740 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 || ||||| || |||| ||| ||| ||| || || ||||||||||||||||||| Sbjct 739 ATCGAGACGGGCGTGCCCTTCATGCTGTTCAAGGACGCGGCCAACCGCAAGTCCAACCAG 680 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || || | |||||| | || |||| | || || ||||| || Sbjct 679 CAGAACCTGGGCACCATCCGCTCCAGCAACTTGTGCTGCGAGGTCATGGAGTACACGGCG 620 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||||||| ||||| || ||||| ||||| | || ||||| ||| || | || Sbjct 619 CCCGACGAGGTGGCCGTGTGCAACCTGGCGTCTGTGGCACTTCCCAAGTTCGTGGAGGAC 560 Query 364327 GGTACTTTTGACCACCAGCAT-CTTTATGACGTAACCTATCATGCTACTTGCAATCTCGA 364385 || | || | | ||| || || || || || || | | || |||| || | Sbjct 559 GG-CGTATTCAACTACAGGATGCTGTACGAGGTCACGAAGGTGGTCACGCGCAACCTGAA 501 Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTC 364444 |||||| |||||| || || || || | || | || || || || || ||||| | Sbjct 500 CAAGGTCATCGACGTCAACTACTACCCCGTGCC-GGAGGCGCGCAAGTCCAACATGCGCC 442 Query 364445 ATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGG 364504 | ||||| | || ||||||||||||| | || |||| || || || | | | Sbjct 441 ACCGCCCCGTGGGCATTGGTGTACAGGGATTGGCGGACGCCTTCATCCTGATGGACTATG 382 Query 364505 CATTTGATTCGCCTG---ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 | || || | || |||| || | || || ||| | ||||| || || || || | Sbjct 381 CGTTCGA---GAGTGACAACGCGCGGGAGCTCAACAAGAACATCTTCGAGACTATCTACT 325 Query 364562 TTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||||| || || | | || ||| |||| | ||||| ||| || || Sbjct 324 ACGCCGCCATGGAGACGTCCATGGAGATTGCCAAAGAGGAAGGG-CCCTACGAGACGTAC 266 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 || || |||||| |||| | |||||||| || | ||| || ||||| || Sbjct 265 GAAGGCTCCCCTGCCAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTGACGCCGTC- 207 Query 364681 GTC----CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAA 364736 ||| | ||| |||||| | || |||| || | | || || |||||| Sbjct 206 GTCGGGGCTCTGGGACTGGGCGGCTCTTAAGGCCAAGGTGGCGCAACACGGGCTTCGCAA 147 Query 364737 CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGA 364796 ||| || | ||||||||||||||||| || || || |||||||| || |||||||| Sbjct 146 CTCGCTGTTGGTGGCGCCCATGCCCACGGCGTCCACGGCGCAGATCCTGGGCAACAACGA 87 Query 364797 GTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCC 364856 | | |||| |||| || ||| | || ||||| || || | || || || | Sbjct 86 GAGTATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCTGGCGGGCGAGTTCAC 27 Query 364857 GGTAGTTAATAAGTACCTAGTCAAGG 364882 | | || || |||||||| | |||| Sbjct 26 GATCGTGAACAAGTACCTGATGAAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303154862606582