Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq8868 91.5 2e-13 seq4754 89.7 6e-13 >seq8868 Length=43550 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/292 (67%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 15365 TCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTATCAC 15424 |||||| | || |||||| ||||| || ||| || ||||| || | ||||| || Sbjct 2320 TCGGGCATCACAGGCGAAGCCATCCAGTGCTACATCTTCATGGGCCCCATCTACTACCAG 2379 Query 15425 CGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGA-CAGGTGACGAC 15483 ||||| |||||||| | |||||||||||||||||| | | ||| | | | || Sbjct 2380 AAGCTCAAGCACATGGTCATGGACAAGATGCACGCGCGTGCCCGAGGACCTCGCGCCG-T 2438 Query 15484 GCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAGAT 15543 |||| |||||||| | || ||||||| | ||| ||||| || | || ||||| Sbjct 2439 GCTCACCCGCCAGCCGACGGAGGGGCGATCGCGCGACGGCGGCCTGCGACTCGGCGAGAT 2498 Query 15544 GGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGAGCGCATGTTTCT 15603 ||| ||||||| | | | ||||||||| | | |||| ||||| | | || Sbjct 2499 GGAGCGGGACTGCCTCATCGGCTACGGCGCCAGCATGCTGCTCATGGAGCGGCTCATGCT 2558 Query 15604 CAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCGGCATGATGAGC 15655 ||| ||| ||||| ||||||||| | | |||| ||||| || || Sbjct 2559 GTCCAGCGACGCGTTCAGTGCCGACGTGTGCCAGGGCTGCCGCATGCTGGGC 2610 >seq4754 Length=3367 Score = 89.7 bits (98), Expect = 6e-13 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || || |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 896 ATCTTCATTGGCCCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 837 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | |||||||| ||| || ||||||| ||||| ||| Sbjct 836 TCGCGGTCGCGTGGGCCGGTGACGATGCTGACGCGTCAGCCCATGGAAGGTCGCGCGCGC 777 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACC 15577 | |||||||| || | ||||||||||| || ||| | | ||||||| | || Sbjct 776 GAAGGTGGCCTTCGTATGGGAGAGATGGAGCGCGATTGCCTGATCTCGCACGGCTCGGCC 717 Query 15578 CAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAA 15637 | ||||||| || ||| |||| ||| ||| ||| || | |||||||| | Sbjct 716 AACTTCCTCATGGACCGCCTGTTCGCGAACTCGGACGCGTACCGCGTGCACGTGTGCGAT 657 Query 15638 GACTGCGGCATGAT 15651 ||||||||| || Sbjct 656 ATCTGCGGCATCAT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611301047797600