Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1363 145 1e-29 seq2060 140 4e-28 >seq1363 Length=31850 Score = 145 bits (160), Expect = 1e-29 Identities = 312/459 (68%), Gaps = 13/459 (3%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | || || || |||||||| | || ||||| | ||| || | |||||||| | Sbjct 9931 ACATGAGGCAGGCAAAGTCGCAGTGCATGCCTTCGTCACGACTGATCAGCTCGTTGGAGA 9872 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | |||| || ||||| ||||| ||||| || ||||| || ||||| ||| || || | Sbjct 9871 AGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAAAAGGAGCCGG 9812 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA----CCG-GC 32827 | ||||| || ||||| || ||||| ||||| | | | ||| |||| ||| || Sbjct 9811 AGAAGAAGATGCCTTCCACGGCCGCGAAGGCCAACAAACGCTCAGCATACGAGGCCGAGC 9752 Query 32828 GCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || ||| | | |||||| | |||||| ||||||||| | || || || || |||| Sbjct 9751 GCGAGTC--GCA-CCACTTGAGCGCCCAACTGGCCTTCTTGGTCACGCACGGGATGGTCT 9695 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | || || | |||| | || || || |||| || || || || | | Sbjct 9694 CGATGGCGCGCAGCAGATGATCCTTCTCCACCGCGTCCTTAATGTACGTGTCGATGAGCA 9635 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | || | ||||| || ||||| || ||||| || || || ||||||||||| | | Sbjct 9634 GCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCG 9575 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCC 33064 |||||| | ||| ||||| | | || |||| || || || || ||||| || || Sbjct 9574 CCTCGGGCACCTGCACTTCGCTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATGCC 9517 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 ||| ||||| || || |||||||| || || || || || Sbjct 9516 GTCGCTGGCGGCGAAGAACGCCAACACGTGCTTGATGAA 9478 >seq2060 Length=42285 Score = 140 bits (154), Expect = 4e-28 Identities = 313/460 (68%), Gaps = 15/460 (3%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | || ||||| |||||||| | || ||||| | ||| || | |||||||| | Sbjct 32383 ACATGAGGCAGGCGAAGTCGCAGTGCATGCCTTCGTCACGACTGATCAGCTCGTTGGAGA 32442 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| ||||| ||||| || ||||| || ||||| ||| || || || Sbjct 32443 AGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGA-GCAGAAGGAGCCC 32501 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA----CCG-G 32826 || ||||| || ||||| || ||||| || || | | | ||| |||| ||| | Sbjct 32502 GAGAAGAAGATGCCTTCCACGGCCGCGAACGCCAGCAAACGCTCCGCATACGAGGCCGAG 32561 Query 32827 CGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 ||| ||| | | |||||| | |||||| ||||||||| | || || || || ||| Sbjct 32562 CGCGAGTC--GCA-CCACTTGAGCGCCCAACTGGCCTTCTTGGTCACGCACGGGATGGTC 32618 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || || | |||| || || || | || |||| || || || || | Sbjct 32619 TCGATGGCGCGCAGCAGATGGTCCTTCTCCACCGTGTCCTTAATGTACGTGTCGATGAGC 32678 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || || | ||||| || ||||| || ||||| || || || ||||||||||| | Sbjct 32679 AGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGC 32738 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTC 33063 ||||||| | ||| ||||| | | || |||| || | || || ||||| || | Sbjct 32739 GCCTCGGGCACCTGCACTTCGCTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGC 32796 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 |||| ||||| || || || |||| || || || || || Sbjct 32797 CGTCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAA 32836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633537739319600