Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10786 95.1 1e-14 seq6703 95.1 1e-14 seq1233 95.1 1e-14 seq5117 89.7 4e-13 seq1268 89.7 4e-13 seq779 86.0 5e-12 >seq10786 Length=3597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || ||| | || || || ||| |||| || || ||||| | Sbjct 244 AAGATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCT 185 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || ||||| |||||||||||||| || || ||||| Sbjct 184 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGAC 125 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 124 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 65 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 64 AACATCCAGAAGGAGTCTAC 45 >seq6703 Length=12229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 12031 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 11972 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| || | || || ||||| |||||||||||||| || || || || || Sbjct 11971 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 11912 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 11911 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 11852 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 11851 ATCCAGAAGGAGTCTAC 11835 >seq1233 Length=22992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 328 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 269 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| || | || || ||||| |||||||||||||| || || || || || Sbjct 268 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 209 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 208 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 149 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 148 ATCCAGAAGGAGTCTAC 132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| || || ||||| | Sbjct 4728 AAGATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCG 4787 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| || | || || ||||| |||||||||||||| || || || || Sbjct 4788 TCGGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 4847 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 4848 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 4907 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 4908 AACATCCAGAAGGAGTCTAC 4927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| || || ||||| | Sbjct 559 AAGATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCT 500 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || ||||| |||||||||||||| || || || || Sbjct 499 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 440 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 439 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 380 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 379 AACATCCAGAAGGAGTCTAC 360 >seq5117 Length=12130 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 11900 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 11841 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || ||||| |||||||||||||| || || ||||| || Sbjct 11840 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 11781 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 11780 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 11721 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 11720 ATCCAGAAGGAGTCTAC 11704 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 12128 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 12069 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || ||||| |||||||||||||| || || ||||| || Sbjct 12068 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 12009 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 12008 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 11949 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 11948 ATCCAGAAGGAGTCTAC 11932 >seq1268 Length=19578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 3 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 62 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || ||||| |||||||||||||| || || ||||| || Sbjct 63 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 122 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 123 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 182 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 183 ATCCAGAAGGAGTCTAC 199 >seq779 Length=1215 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| || || ||||| | Sbjct 244 AAGATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCT 185 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || ||||| |||||||||||||| || || || || Sbjct 184 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 125 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 124 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 65 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 64 AACATCCAGAAGGAGTCTAC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419667121208065