Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8319 131 1e-25 seq10380 127 2e-24 >seq8319 Length=37522 Score = 131 bits (144), Expect = 1e-25 Identities = 302/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193 || || || ||||| || ||||| |||||| || | || ||||| | || ||| | || Sbjct 9864 GGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTG-GTTCAGATA 9922 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 | |||||| || || | ||| || ||||| ||||| || |||| || || || Sbjct 9923 CACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCACTTGGGC 9982 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 | | || | || | || ||||| ||||| || || || |||| ||||| || Sbjct 9983 CACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCCCATATC 10042 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | ||| |||| ||||| || ||||| ||||| || || || || || || || Sbjct 10043 GGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTGGCAGAA 10102 Query 20374 CAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAAT 20433 || ||| || ||||| ||||||||| || |||||||||||||| || | | | Sbjct 10103 CATGTGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGAAAGCAC 10162 Query 20434 GATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATG---TACGACAATTGGTC 20490 ||| | | ||| ||| ||| || || | | |||| | | || |||||| Sbjct 10163 GATCCGACGGTCGCTCGG---ATTCGTTCGTAGCTTCTGAATGACTTCGGCCAGTTGGTC 10219 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 | || || || || || ||||| | | |||| |||| || || || || | ||| Sbjct 10220 CACGCCTTGACCAGTGTAATCAGCGTGCATGTCCGTGTACTTGGCTCCGAAATGGCGCCA 10279 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCC 20581 |||||| |||||||| || |||| ||| ||| Sbjct 10280 CTGGAAGCCGTAAACCGGCCCCAGATCGCCC 10310 >seq10380 Length=37184 Score = 127 bits (140), Expect = 2e-24 Identities = 301/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193 || || || ||||| || ||||| |||||| || |||| ||||| | || ||| | || Sbjct 12519 GGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGTAGCGGCTCCACGTG-GTTCAGATA 12461 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 | |||||| || || | ||| |||||||| ||||| || |||| || || || Sbjct 12460 CACGTGGGCGTCACCAATGACGTGGATAAACTCGCCGGGCTGCAGGCCAGCCACTTGGGC 12401 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 | | || | || | || || || ||||| || || || |||| ||||| || Sbjct 12400 CACGAGTCTCGTAAGCAGCGCGTAACTAGCGATGTTGAAGGGTACGCCCAGCCCCATATC 12341 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | |||||||| ||||| || || || || || || || || || ||||| || Sbjct 12340 GGCCGAACGCTGATACATTTGACACGACAGTTCGCCATCCGCCACGTAGAACTGACAAAA 12281 Query 20374 CAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAAT 20433 || ||| || ||||| || |||||| || |||||||||||||| || | | | Sbjct 12280 CATGTGGCACGGCGGTAGTGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGAAAGCAC 12221 Query 20434 GATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATG---TACGACAATTGGTC 20490 ||| | | ||| ||| ||| || || | | |||| | | || |||||| Sbjct 12220 GATGCGACGGTCGCTCGG---ATTCGTTCGTAGCTTCTGAATGACTTCAGCCAGTTGGTC 12164 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 | || ||||| || || ||||| | | || | |||| ||||| || || | ||| Sbjct 12163 CACGCCTTGGCCAGTGTAATCAGCGTGCATGTTCGTGTACTTGGCCCCGAAATGACGCCA 12104 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCC 20581 ||||| ||||| || || |||| ||| ||| Sbjct 12103 TTGGAAGCCGTAGACCGGCCCCAGATCGCCC 12073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441307140278840