Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_009447.1 Length=52414 Score E Sequences producing significant alignments: (Bits) Value seq4218 89.7 2e-13 seq1701 89.7 2e-13 >seq4218 Length=55731 Score = 89.7 bits (98), Expect = 2e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 29415 GCGATCTGGTTCGTCAGGCGCTCTTGAACTTGCAGGCGCTTGGCGAAAATGTCTGCCAGC 29474 |||||||| |||||||||||||| || || ||||| ||| ||||| | || | || | Sbjct 6344 GCGATCTGCTTCGTCAGGCGCTCCTGCACCTGCAGTCGCCGCGCGAACACCTCGGACACC 6285 Query 29475 CGCTTGAGCTTCGAAATACCGACGACTTTGCCGCTCGGGATATAGCCGATATGGGCCGTT 29534 ||| ||||| | || | || |||||| ||||||| |||||||| || || | Sbjct 6284 CGCGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCCGATGTGCACCTTG 6225 Query 29535 CCCATGATCGCCGCCATATGGTGTTCGCA 29563 ||| ||| || | |||| ||||| ||||| Sbjct 6224 CCCGTGAACGGCACCATGTGGTGCTCGCA 6196 >seq1701 Length=53897 Score = 89.7 bits (98), Expect = 2e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 29415 GCGATCTGGTTCGTCAGGCGCTCTTGAACTTGCAGGCGCTTGGCGAAAATGTCTGCCAGC 29474 |||||||| |||||||||||||| || || ||||| ||| ||||| | || | || | Sbjct 49566 GCGATCTGCTTCGTCAGGCGCTCCTGCACCTGCAGTCGCCGCGCGAACACCTCGGACACC 49625 Query 29475 CGCTTGAGCTTCGAAATACCGACGACTTTGCCGCTCGGGATATAGCCGATATGGGCCGTT 29534 ||| ||||| | || | || |||||| ||||||| |||||||| || || | Sbjct 49626 CGCGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCCGATGTGCACCTTG 49685 Query 29535 CCCATGATCGCCGCCATATGGTGTTCGCA 29563 ||| ||| || | |||| ||||| ||||| Sbjct 49686 CCCGTGAACGGCACCATGTGGTGCTCGCA 49714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167579513582512