Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1233 149 1e-30 seq6703 141 2e-28 seq10786 127 5e-24 seq5117 127 5e-24 seq1268 123 6e-23 seq779 122 2e-22 seq10994 120 7e-22 seq9255 96.9 8e-15 seq5891 87.8 4e-12 >seq1233 Length=22992 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| || || |||| ||| || || ||||| || |||| Sbjct 98 CATG-CCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGT 156 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 157 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAG 216 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||||||| ||||| || || || || || || | Sbjct 217 GCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCT 276 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 277 CCACGTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 328 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | ||| || || |||| ||| || || ||||| || |||||| Sbjct 4958 TCCACCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 4899 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 4898 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 4839 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || ||||||||| ||||| || || || || || || || || Sbjct 4838 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 4779 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || || || ||||| ||||| |||||||| Sbjct 4778 GTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4731 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| || || |||| ||| || || ||||| || |||| Sbjct 326 CATG-CCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGT 384 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 385 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAG 444 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||||||| |||||||| || || || || | | Sbjct 445 GCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCT 504 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || || || ||||| ||||| |||||||| Sbjct 505 CCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 556 >seq6703 Length=12229 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || || || | ||| || || ||||| || |||||| Sbjct 11804 TCCGCCACGAAGACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 11863 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 11864 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 11923 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || ||||||||| ||||| || || || || || || || || Sbjct 11924 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 11983 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 11984 GTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 12031 Score = 109 bits (120), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| || || |||| ||| || || ||||| || |||| Sbjct 12029 CATG-CCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGT 12087 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 12088 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAG 12147 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||||||| ||||| || || || || || || | Sbjct 12148 GCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCT 12207 Query 288422 CTACTTCGAGCGTGATCGTCTT 288443 | || || |||||||||||||| Sbjct 12208 CCACGTCCAGCGTGATCGTCTT 12229 >seq10786 Length=3597 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| || || || | || || || ||||| || |||| Sbjct 11 CATG-CCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGT 69 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||| ||||| || Sbjct 70 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGG 129 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||||||| |||||||| || || || || | | Sbjct 130 GCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCT 189 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || ||||||||||| ||||| |||||||| Sbjct 190 CCACGTCCAGCGTGATCGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 241 >seq5117 Length=12130 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| || || || | || || || ||||| || |||| Sbjct 11898 CATG-CCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGT 11956 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||| ||||| || Sbjct 11957 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGG 12016 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||||||| |||||||| || || || || | | Sbjct 12017 GCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCT 12076 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || ||||||||||| ||||| |||||||| Sbjct 12077 CCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 12128 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 11710 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 11769 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || || ||||||||| |||||||| Sbjct 11770 ATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 11829 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || |||||||||||||| || ||||||||||| ||| Sbjct 11830 TCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACG 11889 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11890 AAGATCTGCAT 11900 >seq1268 Length=19578 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 193 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 134 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || || ||||||||| |||||||| Sbjct 133 ATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 74 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || |||||||||||||| || ||||||||||| ||| Sbjct 73 TCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACG 14 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 13 AAGATCTGCAT 3 >seq779 Length=1215 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| || || || | || || || ||||| || |||| Sbjct 11 CATG-CCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGT 69 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||| ||||| || | Sbjct 70 CGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAG 129 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||||||| |||||||| || || || || | | Sbjct 130 GCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCT 189 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || || || ||||| ||||| |||||||| Sbjct 190 CCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 241 >seq10994 Length=1377 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | |||||||| ||||| || | || || || ||||||||| Sbjct 1178 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 1237 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | ||||| ||||| || |||||||||||| || || || || Sbjct 1238 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 1297 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || || || || || |||||||| |||||||| ||||| ||||| || || Sbjct 1298 ATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAG 1357 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 1358 ATCTGCATGAT 1368 >seq9255 Length=18854 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 |||||| || ||| | || || |||||||||||| |||| |||| || |||||| Sbjct 15257 ATCCTTGCCGCCCATTAGTCGCGTACCGAACTGGCCAATCGGCGACAAGAGGTGGATGTT 15316 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461 || || || ||| |||| || || | |||||||||||| || |||||| || || || Sbjct 15317 GTTACTGCCCACAAAATCTTGGGCCATGTTCACGATGGTGCCCTGCAGACTCGCCTCTCC 15376 Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 |||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 15377 GTGGTGATACGCCGAGTGCTCCGAGACATAACCAGCCAACTGCGCAACCTT 15427 >seq5891 Length=34621 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 |||||| || ||| || || || |||||||||||| |||| ||| || |||||| Sbjct 14352 ATCCTTGCCGCCCATCAGTCGCGTACCGAACTGGCCAATCGGCGACAGGAGGTGGATGTT 14411 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461 ||||| || ||| |||| || || | |||||||||||| || |||||| | || || Sbjct 14412 GTTGCTGCCCACAAAATCTTGGGCCATGTTCACGATGGTACCCTGCAGACTCACCTCTCC 14471 Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 |||||||| || || || | || ||||| ||||| || ||||| Sbjct 14472 GTGGTGATACGCCGAGTGTTCCGAGACATAACCAGCCAACTGCGCGACCTT 14522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179474524453878