Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10994 116 4e-21 seq5117 111 2e-19 seq1268 111 2e-19 seq10786 109 6e-19 seq6703 105 7e-18 seq1233 105 7e-18 seq779 104 3e-17 seq3516 86.0 7e-12 seq42 86.0 7e-12 seq6148 84.2 2e-11 seq2466 82.4 8e-11 >seq10994 Length=1377 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||| || || |||| || |||||||| || ||||| | Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || ||||||||| |||||| || |||| | | | Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 1294 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | |||| || ||||| || | ||||||||| || ||||| || ||||| ||| Sbjct 1295 TCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACA 1354 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 1355 AAGATCTGCAT 1365 >seq5117 Length=12130 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 11709 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 11768 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || ||||||||| |||||| || || | ||| Sbjct 11769 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 11827 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | |||||| || |||||||| || ||||| | Sbjct 11828 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 11887 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 11888 CGAAGATCTGCAT 11900 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 11937 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 11996 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || ||||||||| |||||| || || | ||| Sbjct 11997 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 12055 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | |||||| || |||||||| || ||||| | Sbjct 12056 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 12115 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 12116 CGAAGATCTGCAT 12128 >seq1268 Length=19578 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 194 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 135 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || ||||||||| |||||| || || | ||| Sbjct 134 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 76 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | |||||| || |||||||| || ||||| | Sbjct 75 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 16 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 15 CGAAGATCTGCAT 3 >seq10786 Length=3597 Score = 109 bits (120), Expect = 6e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 50 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 109 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || ||||||||| |||||| || || | ||| Sbjct 110 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 168 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | |||||| || ||||| || || ||||| | Sbjct 169 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGAGTCTTCA 228 Query 42196 CAAAGATTTGCATTTTC 42212 | ||||| ||||| ||| Sbjct 229 CGAAGATCTGCATCTTC 245 >seq6703 Length=12229 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 11816 ACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 11875 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||| | || | || |||||| Sbjct 11876 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 11935 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| |||||| || || | | | | || ||| || ||||| || | |||||| Sbjct 11936 GTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGAT 11995 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || ||||| || ||||| ||||| Sbjct 11996 CGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 12031 >seq1233 Length=22992 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 4922 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 4863 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| || || | | Sbjct 4862 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATT 4803 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| || ||||| || | |||||| || ||||| || || ||||| || Sbjct 4802 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCAC 4743 Query 42197 AAAGATTTGCATTTTC 42212 ||||| ||||| ||| Sbjct 4742 GAAGATCTGCATCTTC 4727 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 137 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 196 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| || || | | Sbjct 197 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATT 256 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| || ||||| || | |||||| || || ||||| || ||||| || Sbjct 257 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCAC 316 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 317 GAAGATCTGCAT 328 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 365 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 424 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| || || | ||| Sbjct 425 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 483 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | |||||| || ||||| || || ||||| | Sbjct 484 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCA 543 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 544 CGAAGATCTGCATCTT 559 >seq779 Length=1215 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 50 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 109 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| || || | ||| Sbjct 110 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 168 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| | ||||| || | |||||| || ||||| || || ||||| | Sbjct 169 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCA 228 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 229 CGAAGATCTGCATCTT 244 >seq3516 Length=19581 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||| || | ||||||||||| || || ||||| || | ||| || || | Sbjct 16838 ACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 16779 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || |||||||| || ||||| || || ||||||||||| Sbjct 16778 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 16737 >seq42 Length=28877 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||| || | ||||||||||| || || ||||| || | ||| || || | Sbjct 26115 ACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 26056 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || |||||||| || ||||| || || ||||||||||| Sbjct 26055 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 26014 >seq6148 Length=6489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 331 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 272 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| |||||| || |||| | | | || ||| | ||||| Sbjct 271 GATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATCGAGTCCGAGGGCTCCAC 212 Query 42161 ATCGACCGTGATGGTTTTGCC 42181 |||| ||||||||| ||||| Sbjct 211 GTCGAGCGTGATGGTCTTGCC 191 >seq2466 Length=31792 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| || ||||| || || ||||||||||| | || Sbjct 25635 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGG 25576 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| |||||| || |||| ||| | | | || ||| | |||| Sbjct 25575 GATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CGTTGTCAATCGAGTCCGAGGGCTCCA 25517 Query 42160 CATCGACCGTGATGGTTTTGCC 42181 | |||| ||||||||| ||||| Sbjct 25516 CGTCGAGCGTGATGGTCTTGCC 25495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543131990305840