Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1233 116 4e-21 seq10786 113 5e-20 seq5117 113 5e-20 seq6703 107 2e-18 seq1268 104 2e-17 seq779 100 3e-16 seq10994 95.1 1e-14 >seq1233 Length=22992 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | |||||| || |||| ||| || || || || |||||||| || Sbjct 102 CCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 161 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 162 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 221 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || ||||| ||||| ||||| ||| || | | | | |||| ||||| Sbjct 222 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGC-TCCAC 280 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||| ||| || ||||| || ||||| Sbjct 281 GTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 328 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | |||||| || |||| ||| || || || || |||||||| || Sbjct 4957 CCACCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4898 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 4897 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 4838 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || ||||| ||||| ||||| ||| || | | | | |||| ||||| Sbjct 4837 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGC-TCCAC 4779 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||| || | || || ||||| || ||||| || Sbjct 4778 GTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTT 4728 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | |||||| || |||| ||| || || || || |||||||| || Sbjct 330 CCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 389 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 390 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 449 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||||| || || | | || | ||||| Sbjct 450 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 509 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||| || | || || ||||| || ||||| || Sbjct 510 TCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTT 559 >seq10786 Length=3597 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | |||||| || || | || || || || || |||||||| || Sbjct 15 CCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 74 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 75 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 134 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||||| || || | | || | ||||| Sbjct 135 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 194 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||| |||| ||| || ||||| || ||||| || Sbjct 195 TCCAGCGTGATCGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATCTT 244 >seq5117 Length=12130 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | |||||| || || | || || || || || |||||||| || Sbjct 11902 CCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11961 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 11962 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 12021 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||||| || || | | || | ||||| Sbjct 12022 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 12081 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| ||| || ||||| || ||||| Sbjct 12082 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 12128 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | |||||| || || | || || || || || |||||||| || Sbjct 11674 CCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11733 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 11734 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 11793 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||||| || || | | || | ||||| Sbjct 11794 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 11853 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| ||| || ||||| || ||||| Sbjct 11854 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 11900 >seq6703 Length=12229 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | |||||| || || | ||| || || || || |||||||| || Sbjct 11805 CCGCCACGAAGACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11864 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 11865 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 11924 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || ||||| ||||| ||||| ||| || | | | | |||| ||||| Sbjct 11925 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGC-TCCAC 11983 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||| ||| || ||||| || ||||| Sbjct 11984 GTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 12031 Score = 105 bits (116), Expect = 7e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | |||||| || |||| ||| || || || || |||||||| || Sbjct 12033 CCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 12092 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 12093 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12152 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 || || || || ||||| ||||| ||||| ||| Sbjct 12153 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACA 12185 >seq1268 Length=19578 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | |||||| || || | || || || || || |||||||| || Sbjct 229 CCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 170 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 169 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 110 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||||| || || | | || | ||||| Sbjct 109 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 50 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| ||| || ||||| || ||||| Sbjct 49 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 3 >seq779 Length=1215 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | |||||| || || | || || || || || |||||||| || Sbjct 15 CCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 74 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 75 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 134 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||||| || || | | || | ||||| Sbjct 135 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 194 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||| || | || || ||||| || ||||| || Sbjct 195 TCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTT 244 >seq10994 Length=1377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | | ||||| |||| || |||||||||||||| | || Sbjct 1178 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 1237 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || || ||||| || || || ||||| ||||| ||| || Sbjct 1238 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 1297 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | |||||| || |||| || || || | Sbjct 1298 ATGCTGT-CCGACGGC-TCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAA 1355 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 1356 AGATCTGCAT 1365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499570471590440