Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq848 504 7e-138 seq4274 453 1e-122 >seq848 Length=74974 Score = 504 bits (558), Expect = 7e-138 Identities = 1133/1691 (67%), Gaps = 43/1691 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || ||||||||||| || || ||| ||| ||| |||| ||||| |||||| Sbjct 17614 GCCACGCCCACGCTGTTCAACGCCGGCACGCCGCGGCCGCAGCTGTCGTCGTGCTTCCTG 17555 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||||||| || || | ||||| |||||| | |||||| | Sbjct 17554 CTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGTGCGTGC 17495 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || ||||| ||||| | ||| || | || |||| | Sbjct 17494 ATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCCACCAACAGC 17435 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| ||| | ||||| ||| || |||| ||||| || || |||||| Sbjct 17434 TACATCCGCGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGTGTGTTCAAC 17375 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||||||||||||||||||||| || || | | | ||||| || ||||| |||| Sbjct 17374 GACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATCTAC 17315 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| |||||| | ||| | |||||||| ||||||||||||||| Sbjct 17314 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAC 17255 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||||| |||||||| | |||||||| || || || ||||| Sbjct 17254 GAGCTCCACCGCGCGCGCGACCTGTTCTACGCGTTGTGGGTGCCTGATCTGTTCATGAAG 17195 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGA-CTGTC 94370 ||||| || ||| | |||||||| ||||| ||||| ||| | ||||| |||| Sbjct 17194 CGCGTGGAAGCCAACGGCAAGTGGAGTCTGTTTTGCCCCAACGAA-GCGCCGGACCTGTA 17136 Query 94371 CGA-CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 | | | | | | || | || || | |||| | |||| | ||| | ||| Sbjct 17135 CAAGTGCTGGGGCGACGAG-TTCGAGGCGCTGTACGAGAAGTACG-AGCGCGAAGGCCGC 17078 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 ||| | ||| || | || | |||||||| ||| |||||| ||| | ||| Sbjct 17077 GCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAG 17018 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| |||| ||| ||||||||||| | | |||| |||||||||||||||| || Sbjct 17017 ACGGGCGTTCCCTTCATGCTGTTCAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAAC 16958 Query 94549 CTCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 || || | || ||||| || ||||| |||| | | ||||| || | || Sbjct 16957 CT---GGGCACCATCCGCTCGAGCAACTTGTGCTGCGAGGTCATGGAGTACACGGCGCCC 16901 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 || ||| | || ||||| ||||||| || | ||| ||| |||||| ||| | Sbjct 16900 GATGAGGTGGCCGTGTGCAACCTGGCGTCTGTGGCGCTGCCCAAGTTCGTGGAAGACG-- 16843 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTC 94725 ||| | | || | | ||| | ||| | | ||||| ||||| Sbjct 16842 ---GCGTATTCAACTAC-AAGAAGCTGTACGAGGT-----------CACGAAGG-TGGTC 16799 Query 94726 TTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 | |||||||||| ||| |||||| |||| ||| ||||| || |||||| || Sbjct 16798 ACGCGCAACCTGAACAAGGTCATCGACGTCAACTACTATCCCGTGCCAGAGGCGCGCAAG 16739 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || ||| | |||||||| || ||||| | |||||||| | | Sbjct 16738 TCCAACATGCGCCACCGCCCCGTGGGCATCGGTGTACAGGGACTGGCGGACGCCTTCATC 16679 Query 94843 ATGATGCGTCTGC-CCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901 ||||| | || | | | ||| || ||| ||| || | || |||||| ||||| Sbjct 16678 CTGATG-GACTTCGCGTTCGAGAGTGCCGAGGCGCGGGAGCTCAACAAGAACATCTTCGA 16620 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | ||| || |||| |||||| | ||| | | | |||| | || | ||||| Sbjct 16619 GACCATCTACTACGCCGCCATGGAGACGTCCATGGAAATCGCCAAA---GATGAAGGGCC 16563 Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGG 95020 |||| ||| | || || |||| | | ||||||| || ||||||||| | |||| Sbjct 16562 CTACGAGACGTACGAAGGCTC-CCCTGCCAGCAAGGGCATCTTCCAGTTCGACATGTGGG 16504 Query 95021 GTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAAC 95077 | |||| || | |||||||| | ||||||| ||||| || | || | | Sbjct 16503 GCGTGACGCCGTCGTCGGGTCTCTGGGACTGGGCGGCTCTGAAGGCCAAGGTGGCGCAGC 16444 Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| | ||| ||||||| || || || ||||||||||| |||||||||||||||| Sbjct 16443 ACGGGCTTCGCAACTCGCTGCTGGTCGCGCCGATGCCCACGGCGTCCACGGCGCAGATCC 16384 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCG 95197 | |||||||||||| |||| || | ||| |||||| |||||||| | || ||||| | Sbjct 16383 TGGGCAACAACGAGAGTATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCTGG 16324 Query 95198 CCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGT 95257 | || || ||| | || | |||||| |||| | ||| || | ||||| |||| Sbjct 16323 CGGGCGAGTTCACGATCGTGAACAAGTACCTGATGAAGGAGCTCATTGAGCTGGGCGTGT 16264 Query 95258 GGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 || | |||| ||||| | || | | |||||| || ||||| | Sbjct 16263 GGACGCCCGAGGTGCGTAACCAGATCCTGAATGACGGCGGCTCGGTGCAGAAGGTGAGCG 16204 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGA 95377 || ||| | ||||||||| | |||||||| |||||||||||| |||| | Sbjct 16203 TGATCCCGCCGCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGACGG 16144 Query 95378 TACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNN 95437 | || |||| |||| | |||||| ||| |||||||||||| Sbjct 16143 TGCTGGACCTGTCGGCGGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTGAACGTGC 16084 Query 95438 NNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGG 95497 || ||||| || | | | || | ||||||||| ||||||| |||| |||| Sbjct 16083 ACATCGCCGACCCAACCATCAGCAAGCTCACGTCCATGCACTTCTACGCCTGGAAGAAGG 16024 Query 95498 GTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCG 95557 | |||||||| || ||||| || |||| | | || || || ||| |||| |||||| Sbjct 16023 GGCTCAAGACGGGCATGTACTACATGCGCGGCCGCCCCAAAGCCGACGCCATCCAGTTCA 15964 Query 95558 CCCTAGAAAAG 95568 || | || ||| Sbjct 15963 CCGTGGACAAG 15953 >seq4274 Length=4240 Score = 453 bits (502), Expect = 1e-122 Identities = 923/1353 (68%), Gaps = 47/1353 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || ||||||||||| || || ||| || ||| |||| ||||| |||||| Sbjct 1330 GCCACGCCCACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTG 1271 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||||||| || || | ||||| |||||| | ||||| | Sbjct 1270 CTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGTGCCTGC 1211 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | ||||| || ||||| |||||| | ||| || | || |||| | Sbjct 1210 ATCTCCAAGTGGGCGGGCGGCATCGGCATCAGTATGCACAACATCCGCGCCACCAACAGC 1151 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| ||| | ||||| ||| || |||| ||||| || || |||||| Sbjct 1150 TACATCCGCGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGTGTGTTCAAC 1091 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||||||||||||||||||||| || || | | | ||||| || ||||| |||| Sbjct 1090 GACACGGCGCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCTCCTTCGCCATCTAC 1031 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| |||||| | ||| | |||||||| ||||||||||||||| Sbjct 1030 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCTTGGACCTGCGCAAGAACCACGGCAAC 971 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||||| |||||||| | |||||||| || ||||| ||||| Sbjct 970 GAGCTCCACCGCGCGCGCGACCTGTTCTACGCGTTGTGGGTGCCTGATCTTTTCATGAAG 911 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGA-CTGT- 94369 ||||| || ||| | |||||| | || || || || ||| | ||||| |||| Sbjct 910 CGCGTGGAAGCCAACGGCAAATGGAGTTTGTTCTGCCCTAACGAA-GCGCCGGACCTGTA 852 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 | | | | | | || | || || | |||| | |||| | ||| | ||| Sbjct 851 CAAATGCTGGGGCGACGAG-TTCGAGGCGCTGTACGAGAAGTACG-AGCGCGAAGGCCGC 794 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 ||| | ||| || | || | |||||||| ||| |||||| ||| | ||| Sbjct 793 GCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAG 734 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| ||||| ||| ||||||||||| | | |||| |||||||||||||||| || Sbjct 733 ACGGGCGTGCCCTTCATGCTGTTCAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAAC 674 Query 94549 CTCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 || || | || |||| || ||||| |||| | | ||||| || | || Sbjct 673 CT---GGGCACCATCCGCTCCAGCAACTTGTGCTGCGAGGTCATGGAGTACACGGCGCCC 617 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGA-TGC 94664 |||||| | || ||||| ||||||| || | || ||| |||||| || || Sbjct 616 GACGAGGTGGCCGTGTGCAACCTGGCGTCTGTGGCACTTCCCAAGTTCGTGGAGGACGGC 557 Query 94665 CTACACGTCTACTGCTTCGTTCGAT-CTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGG 94723 || | |||| | ||| ||| | ||| | | ||||| ||| Sbjct 556 GTATTCAACTACAG--------GATGCTGTACGAGGT-----------CACGAAGG-TGG 517 Query 94724 TCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 || | |||||||||| ||| |||||| |||| ||||||||| ||||||||| | Sbjct 516 TCACGCGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTGCCGGAGGCGCGCA 457 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 | || ||| || || || ||| | ||||| || || ||||| || |||||||| | Sbjct 456 AGTCCAACATGCGCCACCGCCCCGTGGGCATTGGTGTACAGGGATTGGCGGACGCCTTCA 397 Query 94841 TGATGATGCGTCT-GCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTC 94899 | ||||| | || | | ||| || | ||||| || | || |||||| ||| Sbjct 396 TCCTGATG-GACTATGCGTTCGAGAGTGACAACGCGCGGGAGCTCAACAAGAACATCTTC 338 Query 94900 GAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG 94959 || | || || |||| |||||| | ||| | | | |||| | || | ||| Sbjct 337 GAGACTATCTACTACGCCGCCATGGAGACGTCCATGGAGATTGCCAAA---GAGGAAGGG 281 Query 94960 CCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTG 95018 || |||| ||| | || || |||| | | ||||||| || ||||||||| | || Sbjct 280 CCCTACGAGACGTACGAAGGCTC-CCCTGCCAGCAAGGGCATCTTCCAGTTCGACATGTG 222 Query 95019 GGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAA 95075 ||| |||| || | ||||| || | ||||||| ||||| || | || | Sbjct 221 GGGCGTGACGCCGTCGTCGGGGCTCTGGGACTGGGCGGCTCTTAAGGCCAAGGTGGCGCA 162 Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 |||||| | ||| ||||| | ||||| |||||||||||||| |||||||||||||| Sbjct 161 ACACGGGCTTCGCAACTCGCTGTTGGTGGCGCCCATGCCCACGGCGTCCACGGCGCAGAT 102 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 ||| |||||||||||| |||| || | ||| |||||| |||||||| | || ||||| Sbjct 101 CCTGGGCAACAACGAGAGTATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCT 42 Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 || || || ||| | || | |||||| |||| Sbjct 41 GGCGGGCGAGTTCACGATCGTGAACAAGTACCT 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494649603739960