Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq848 131 2e-25 seq4274 118 1e-21 >seq848 Length=74974 Score = 131 bits (144), Expect = 2e-25 Identities = 303/451 (67%), Gaps = 7/451 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACG 122956 ||||| | ||||||| || || | |||||||||| || | ||| | ||| |||| Sbjct 17731 AAGGTGGTCGAACGTCCGCAGCAGCTCATCATGCGCGTGGCGCTGGGCATCCACAAGACG 17672 Query 122957 CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016 ||||| | ||| || || ||||| | ||||| || || || ||||||||||| Sbjct 17671 A-ACATCAAGGCGGCGCTGGAGACCTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGC 17613 Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076 | ||||| ||||| |||||||||| | ||| ||| |||| ||||| || |||| Sbjct 17612 CACGCCCACGCTGTTCAACGCCGGCACGCCGCGGCCGCAGCTGTCGTCGTGCTTCCTGCT 17553 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGAT 123136 || ||| || ||| ||| || ||||| || || | | || |||| || Sbjct 17552 GGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGTGCGTGCAT 17493 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 ||||| | | ||||||||| ||| | | | ||||| || | | | | | ||| Sbjct 17492 CTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCCACCAACAGCTA 17433 Query 123197 CATCAGAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATA 123255 |||| | ||||| |||| ||| || || || |||||||||| || | ||| Sbjct 17432 CATCCGCGGCACCAACGG-CTCGTCCAATGGCATCATCCCCATGCTGCGTGTGTTCAACG 17374 Query 123256 ACGCCGTGCGGCACGTCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTATC 123312 || | | ||| |||| |||||| |||||||| ||||| ||| | | || ||||| | Sbjct 17373 ACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATCTACC 17314 Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTT 123343 | || |||||||||| || |||| ||| || Sbjct 17313 TGGAGCCGTGGCACGCCGACGTGTTCGAGTT 17283 >seq4274 Length=4240 Score = 118 bits (130), Expect = 1e-21 Identities = 302/454 (67%), Gaps = 7/454 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACG 122956 ||||| | ||||||| || || | |||||||||| || | ||| | ||| |||| Sbjct 1447 AAGGTGGTCGAACGTCCGCAGCAGCTCATCATGCGCGTGGCGCTGGGCATCCACAAGACG 1388 Query 122957 CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016 ||||| | |||| || || ||||| | ||||| || || || ||||||||||| Sbjct 1387 A-ACATCAAGGCCGCGCTGGAGACCTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGC 1329 Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076 | ||||| ||||| |||||||||| | || ||| |||| ||||| || |||| Sbjct 1328 CACGCCCACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCT 1269 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGAT 123136 || ||| || ||| ||| || ||||| || || | | || || | || Sbjct 1268 GGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGTGCCTGCAT 1209 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 ||||| | | |||||||| ||| | | ||||| || | | | | | ||| Sbjct 1208 CTCCAAGTGGGCGGGCGGCATCGGCATCAGTATGCACAACATCCGCGCCACCAACAGCTA 1149 Query 123197 CATCAGAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATA 123255 |||| | ||||| |||| ||| || || || |||||||||| || | ||| Sbjct 1148 CATCCGCGGCACCAACGG-CTCGTCCAATGGCATCATCCCCATGCTGCGTGTGTTCAACG 1090 Query 123256 ACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTATC 123312 || | | ||| |||| |||||||||||| || ||||| ||| | | || ||||| | Sbjct 1089 ACACGGCGCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCTCCTTCGCCATCTACC 1030 Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTT 123346 | || |||||||||| || |||| ||| || || Sbjct 1029 TGGAGCCGTGGCACGCCGACGTGTTCGAGTTCTT 996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451935958873960