Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq848 233 3e-56 seq1363 197 2e-45 seq2060 183 5e-41 seq4274 123 4e-23 seq8319 84.2 3e-11 >seq848 Length=74974 Score = 233 bits (258), Expect = 3e-56 Identities = 524/772 (68%), Gaps = 19/772 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| || | || | || |||||||| Sbjct 15953 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTGGGGCGGCCGCGCATGTAGTACAT 16009 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||| | || ||||| | | | Sbjct 16010 GCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTGCTGATGGT 16069 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| | |||||| |||||||| ||| |||| ||||||| || || | Sbjct 16070 TGGGTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATG-TAGGCGCCGCGGTCCG 16128 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | ||||||||| |||||||||||||||||| || || || Sbjct 16129 CCGACAGGTCCAGCACCGTCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 16188 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 |||| | || | | | ||| | ||| | ||||||| ||| || | ||| | Sbjct 16189 TGTGCGGCGGGATCAC-GCTCACCTTCTGCACCGAGCCGCCGTCATTCAGGA-TCTGGTT 16246 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||||| ||||| | || |||||| || ||||| ||| | Sbjct 16247 ACGCACCTCGGGCGTCCACACGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTGTTCAC 16306 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || || | |||||| | ||| || ||| |||| ||| | || |||| Sbjct 16307 GATCGTGAACTCGCCCGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGAT 16366 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||||||||| | ||||| || ||| ||||||||||| || || | ||||| Sbjct 16367 ACTCTCGTTGTTGCCCAGGATCTGCGCCGTGGACGCCGTGGGCATCGGCGCGACCAGCAG 16426 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCAT 204369 |||||||| | |||| | ||| || |||||||| | |||||| | | Sbjct 16427 CGAGTTGCGAAGCCCGTGCTGCGCCACCTTGGCCTTCAGAGCCGCCCAGTCCCAGAGACC 16486 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || || |||||||||||||||||||||| |||||||| | ||| | ||| ||| Sbjct 16487 CGACGACGGCGTCACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCAGGGGAGCC 16546 Query 204430 CTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGT 204488 | ||||||| || ||| || |||| || | || || || | |||||||| Sbjct 16547 TTCGTACGTCTCGTAGGGCCCTTCATCTT-TGGCGATTTCCATGGACGTCTCCATGGCGG 16605 Query 204489 GATAGTACATGGTCTCAAAGATCTGAACGTTTA-ATCTGGCGGCCTCCGTTCCGTCAAAC 204547 ||||| |||||||| ||||| | ||| | || || ||||| | | || ||| Sbjct 16606 CGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGC-GCCTCGGCACTCTCGAAC 16664 Query 204548 GCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCA 204599 || | ||| || | || ||||||||| ||||| || ||||| |||| Sbjct 16665 GCGAAGTCCATCAGGATGAAGGCGTCCGCCAGTCCCTGTACACCGATGCCCA 16716 >seq1363 Length=31850 Score = 197 bits (218), Expect = 2e-45 Identities = 534/803 (67%), Gaps = 22/803 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 10194 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 10135 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||| | | || || | ||||| || ||| ||||| || || Sbjct 10134 CTTGGCGTGGTAGATCTTGGACACGCCCAGCGAGTACAGCAGCCGGTCGGCCACGAACTC 10075 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| ||||| || | |||| || || | ||| || || |||| ||| Sbjct 10074 AATGTACTGGCACATGAGCGCCGAGTTCATGCCGATGAGCTCCACCGGCAGCGAGTCCCG 10015 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT-CTGCGAGACACGTTCGTACC 159887 || ||||| | ||| ||| || || ||| | ||| ||| | ||||| || | | Sbjct 10014 CACGAACTCGTGCTCGATCAACACGGCGTCGCGTATAATGCTGTGC-ACACGCTCCTCCG 9956 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| |||||| |||||||||||||||| || | Sbjct 9955 GCAGCTTGTTCACGA---GTTTCGAGTACATGAGGCAGGCAAAGTCGCAGTGCATGCCTT 9899 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| ||| ||| | ||||||||| | | ||||||| ||||||| || ||| || | Sbjct 9898 CGTCACGACTGATCAGCTCGTTGGAGAAGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCA 9839 Query 160008 GCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||||||| | ||| || ||||| || ||||||||||| || ||| Sbjct 9838 GCCAGAAGATGGA-GCAAAAGGAGCCGGAGAAGAAGATGCCTTCCACGGCCGCGAAGGCC 9780 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCATTC 160122 | | | |||| || | ||||| | | | ||| |||| ||| ||||| Sbjct 9779 AACAAACGCTCAGCATACGAGGCCGAG----CGCGAGTCGCACCACTTGAGCGCCCAACT 9724 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| | | |||||| ||| ||||| |||| | || |||| |||| Sbjct 9723 GGCCTTCTTGGTCACGCACGGGATGGTCTCGATGGCGCGCAGCAGATGATCCTTCTCCAC 9664 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 | | ||||| || || | || ||| |||||| | || | ||| | || ||||| Sbjct 9663 CGCGTCCTTAATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCGAT 9604 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTC-CTGTGTGAACC 160301 ||| ||||| ||| |||||| | |||||| | |||||| || ||| |||| Sbjct 9603 GGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACTTCGCTG-CTGAAGT 9545 Query 160302 T-TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | || || || || | || || | |||||| ||| || ||||| ||||||||||| Sbjct 9544 TCATGGCCAAG-TTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAACACGTGC 9486 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCC 160420 |||||| || | ||||| | ||| || |||||| ||| ||| || || Sbjct 9485 TTGATGAAGTGGCGCTCGTTGTCCGAGAG---GTTGGCCCAGTCCTTCAGGTCGTGCACC 9429 Query 160421 AAATCAACCTCTTCCGCGCTCCA 160443 | ||| | ||| || ||| |||| Sbjct 9428 AGATCCAGCTCCTCGGCGGTCCA 9406 >seq2060 Length=42285 Score = 183 bits (202), Expect = 5e-41 Identities = 563/859 (66%), Gaps = 20/859 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 32120 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 32179 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| ||| ||| ||| | | || || | ||||| | ||| ||||| || || Sbjct 32180 CTTGGCGTTGTAGATCTTGGACACGCCCAGCGAGTACAGCAGGCGGTCGGCCACGAACTC 32239 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| ||||| || | |||| || || | |||| || || |||| ||| Sbjct 32240 AATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACAGGCAGCGAGTCCCG 32299 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| | || || ||| | ||| ||| | ||||| || | | Sbjct 32300 CACGAACTCGTGCTCGATCACCACGGCGTCGCGGATAATG-GCGTGCACACGCTCCTCCG 32358 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| |||||| || ||||||||||||| || | Sbjct 32359 GCAGCTTGTTCACGA---GCTTCGAGTACATGAGGCAGGCGAAGTCGCAGTGCATGCCTT 32415 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| ||| ||| | ||||||||| | | ||||||| ||||||| || ||| || | Sbjct 32416 CGTCACGACTGATCAGCTCGTTGGAGAAGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCA 32475 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| ||| | | | | || ||||| || ||||||||||| |||||| Sbjct 32476 GCCAGAAGATGG-AGCAGAAGGAGCCCGAGAAGAAGATGCCTTCCACGGCCGCGAACGCC 32534 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCATTC 160122 | | | ||| || | ||||| | | | ||| |||| ||| ||||| Sbjct 32535 AGCAAACGCTCCGCATACGAGGCCGAG----CGCGAGTCGCACCACTTGAGCGCCCAACT 32590 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| | | |||||| ||| ||||| |||| | || ||||| |||| Sbjct 32591 GGCCTTCTTGGTCACGCACGGGATGGTCTCGATGGCGCGCAGCAGATGGTCCTTCTCCAC 32650 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 | ||||| || || | || ||| |||||| | || | ||| | || ||||| Sbjct 32651 CGTGTCCTTAATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCGAT 32710 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTC-CTGTGTGAACC 160301 ||| ||||| ||| |||||| | |||||| | |||||| || ||| |||| Sbjct 32711 GGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACTTCGCTG-CTGAAGT 32769 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | |||| || | || || | |||||| ||| || ||||| |||| |||||| Sbjct 32770 TCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGCACGTGCT 32829 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 |||||| | | ||| | | | |||| || |||||| | | ||| || ||| Sbjct 32830 TGATGAAGCGGCGCTCATTGTCGGTGAG---GTTGCCCCAGTCCTTGAGGTCGTGCACCA 32886 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATGG 160481 ||| | ||| || ||| |||| | |||| || | |||||||| |||||| Sbjct 32887 GATCCAGCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTACATCTGCCAGATCT 32946 Query 160482 CGTGCTCTCTGATCGGAAA 160500 | |||| |||||| || Sbjct 32947 CCAGCTCCTGGATCGGGAA 32965 >seq4274 Length=4240 Score = 123 bits (136), Expect = 4e-23 Identities = 224/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||| | |||| || || || | |||||| | ||| || ||| |||| ||| | || Sbjct 17 GTTCACGATCGTGAACTCGCCCGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGG 76 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 |||| |||||||||||| | ||||| || ||| |||||||||||||| |||| Sbjct 77 CTCGATACTCTCGTTGTTGCCCAGGATCTGCGCCGTGGACGCCGTGGGCATGGGCGCCAC 136 Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC--- 204363 | ||| |||||||| | |||| || ||| || ||| |||| | |||||| Sbjct 137 CAACAGCGAGTTGCGAAGCCCGTGTTGCGCCACCTTGGCCTTAAGAGCCGCCCAGTCCCA 196 Query 204364 GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 | || || || |||||||||||||||||||||| |||||||| | ||| | || Sbjct 197 GAGCCCCGACGACGGCGTCACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCAGG 256 Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483 | ||| | ||||||| || ||| ||||||| || | || || | |||| Sbjct 257 GGAGCCTTCGTACGTCTCGTAGGGCCCTTCCTCTTTGGCAATCTCCATGGACGTCTCCAT 316 Query 204484 GGCGTGATAGTACATGGTCTCAAAGAT 204510 |||| ||||| || ||||| ||||| Sbjct 317 GGCGGCGTAGTAGATAGTCTCGAAGAT 343 >seq8319 Length=37522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 116094 TCGTGTCTGTTTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCG 116153 ||||||| | ||||| | || || || |||||| ||||||||||||| ||| | || Sbjct 10069 TCGTGTCAAATGTACCAGCGTTCGGCCGATATGGGGCTGGGCGTACCCTTCAACATCGCC 10010 Query 116154 AGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTG 116213 || |||||||| || || | |||| || |||| | |||| | |||||| || Sbjct 10009 AGTTACGCGCTGCTCACGAGACTCGTGGCCCAAGTGGCTGGCCTGCAGCCCGGAGAGTTC 9950 Query 116214 ATACACTCTATTGGGGACGCGCACATCTACACCAACCATGTGGCGCAGCTCGAGCTGCAG 116273 || ||| ||||| ||||| ||| | || ||||| |||| || ||| ||| |||| Sbjct 9949 ATCCACGTCATTGGCGACGCCCACGTGTATCTGAACCACGTGGAGCCGCTGCAGCAGCAG 9890 Query 116274 GTGAAGCGG 116282 | | |||| Sbjct 9889 CTCACGCGG 9881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795036910724560