Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5117 141 2e-28 seq1268 141 2e-28 seq10786 134 3e-26 seq779 134 3e-26 seq6703 132 1e-25 seq1233 132 1e-25 seq10994 116 9e-21 seq3516 96.9 8e-15 seq42 96.9 8e-15 >seq5117 Length=12130 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||||||||| |||||||| |||| ||||||||| || || Sbjct 11680 CGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 11739 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || ||||||||||| || || || Sbjct 11740 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 11799 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||||| |||| | ||| | | || || |||| | Sbjct 11800 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGC 11859 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| ||||| ||||| || || || Sbjct 11860 GTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTG 11897 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| |||||||| |||| ||||||||| || || | || || Sbjct 11917 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 11976 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| || ||||||||||| || || || || || Sbjct 11977 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 12036 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||||||||| |||| | ||| | | || || |||| |||||||||| Sbjct 12037 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 12096 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| ||||| || || || Sbjct 12097 TTGCCCGTCAGAGTCTTCACGAAGATCTG 12125 >seq1268 Length=19578 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||||||||| |||||||| |||| ||||||||| || || Sbjct 223 CGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 164 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || ||||||||||| || || || Sbjct 163 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 104 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||||| |||| | ||| | | || || |||| | Sbjct 103 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGC 44 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| ||||| ||||| || || || Sbjct 43 GTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTG 6 >seq10786 Length=3597 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| |||||||| |||| ||||||||| || || | || || Sbjct 30 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 89 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| || ||||||||||| || || || || || Sbjct 90 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 149 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||||||||| |||| | ||| | | || || |||| |||||||||| Sbjct 150 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 209 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || Sbjct 210 TTGCCAGTCAGAGTCTTCACGAAGATCTG 238 >seq779 Length=1215 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| |||||||| |||| ||||||||| || || | || || Sbjct 30 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 89 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| || ||||||||||| || || || || || Sbjct 90 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 149 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||||||||| |||| | ||| | | || || |||| |||||||||| Sbjct 150 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 209 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 210 TTGCCAGTGAGGGTCTTCACGAAGATCTG 238 >seq6703 Length=12229 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || |||||||| |||| ||||||||| || || Sbjct 11811 CGAAGACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 11870 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 11871 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 11930 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || |||||||| |||| | ||| | | || || |||| | Sbjct 11931 TCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 11990 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| ||||| ||||| || || || Sbjct 11991 GTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTG 12028 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || |||||||| |||| ||||||||| || || Sbjct 12039 CGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 12098 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 12099 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 12158 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || |||||||| |||| | ||| | | || || |||| | Sbjct 12159 TCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 12218 Query 199589 GTGATCGTCTT 199599 ||||||||||| Sbjct 12219 GTGATCGTCTT 12229 >seq1233 Length=22992 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || |||||||| |||| ||||||||| || || Sbjct 108 CGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 167 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 168 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 227 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || |||||||| |||| | ||| | | || || |||| | Sbjct 228 TCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 287 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| ||||| ||||| || || || Sbjct 288 GTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTG 325 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || |||||||| |||| ||||||||| || || Sbjct 336 CGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 395 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 396 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 455 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||||| |||| | ||| | | || || |||| | Sbjct 456 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGC 515 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| || ||||| || || || Sbjct 516 GTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 553 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || |||||||| |||| ||||||||| || || Sbjct 4951 CGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 4892 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 4891 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 4832 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || |||||||| |||| | ||| | | || || |||| | Sbjct 4831 TCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 4772 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| || ||||| || || || Sbjct 4771 GTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 4734 >seq10994 Length=1377 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | || || | || || ||||||||||| |||||||||| Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||||||||| || || ||||| ||||| || || ||||| || | Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 1295 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || |||| |||||| ||||| ||||| || || ||||||| Sbjct 1296 CAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAA 1355 Query 199620 AAATTTG 199626 | || || Sbjct 1356 AGATCTG 1362 >seq3516 Length=19581 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || |||||||| || |||||| |||| ||||||||| | || || | || || ||| Sbjct 16831 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCC 16772 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| ||||||||||| |||||||||||||| || ||||||| Sbjct 16771 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCT 16724 >seq42 Length=28877 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || |||||||| || |||||| |||| ||||||||| | || || | || || ||| Sbjct 26108 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCC 26049 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| ||||||||||| |||||||||||||| || ||||||| Sbjct 26048 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCT 26001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178741836192367