Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5117 156 5e-33 seq1268 156 5e-33 seq10994 149 7e-31 seq10786 149 7e-31 seq6703 147 2e-30 seq779 141 1e-28 seq1233 140 4e-28 seq3516 109 6e-19 seq42 109 6e-19 seq2466 86.0 7e-12 seq3432 84.2 2e-11 seq6148 82.4 9e-11 >seq5117 Length=12130 Score = 156 bits (172), Expect = 5e-33 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||| | |||||| || | ||| |||||| ||||| ||||| Sbjct 11667 TTAGTTTCCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTA 11726 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || ||||||||||||||||| |||| |||||||||||| Sbjct 11727 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 11786 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 || ||| | || ||||||||| ||| |||| ||| | ||| | | | || ||| | Sbjct 11787 GGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAG 11845 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||| || ||||||||||| || || || ||||| ||||| Sbjct 11846 GCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 11900 Score = 152 bits (168), Expect = 6e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 11919 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 11978 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||||||||| ||| | || ||||||||| Sbjct 11979 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 12038 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||| |||| ||| | ||| | | | || ||| | ||||| |||| |||||| || | Sbjct 12039 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 12097 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||| || || || ||||| ||||| Sbjct 12098 TGCCCGTCAGAGTCTTCACGAAGATCTGCAT 12128 >seq1268 Length=19578 Score = 156 bits (172), Expect = 5e-33 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||| | |||||| || | ||| |||||| ||||| ||||| Sbjct 236 TTAGTTTCCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTA 177 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || ||||||||||||||||| |||| |||||||||||| Sbjct 176 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 117 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 || ||| | || ||||||||| ||| |||| ||| | ||| | | | || ||| | Sbjct 116 GGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAG 58 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||| || ||||||||||| || || || ||||| ||||| Sbjct 57 GCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 3 >seq10994 Length=1377 Score = 149 bits (164), Expect = 7e-31 Identities = 149/191 (78%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| || ||||||||||||||||| | Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | ||| | || ||||||||| ||| |||| ||||| | | | Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 1294 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || ||||| |||| ||||||||| || |||||||| || || ||| Sbjct 1295 TCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACA 1354 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 1355 AAGATCTGCAT 1365 >seq10786 Length=3597 Score = 149 bits (164), Expect = 7e-31 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 32 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 91 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||||||||| ||| | || ||||||||| Sbjct 92 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 151 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||| |||| ||| | ||| | | | || ||| | ||||| |||| |||||| || | Sbjct 152 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 210 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| ||||| || || || ||||| ||||| || Sbjct 211 TGCCAGTCAGAGTCTTCACGAAGATCTGCATCTT 244 >seq6703 Length=12229 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| ||| |||||| ||||| ||||||||| || ||||| | Sbjct 11816 ACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 11875 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| ||||||||||| | ||| | || |||||| Sbjct 11876 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 11935 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| |||| ||| | | | | || ||| || ||||| |||| |||||| Sbjct 11936 GTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGAT 11995 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||||||| || || || ||||| ||||| Sbjct 11996 CGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 12031 Score = 113 bits (124), Expect = 5e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 12050 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 12109 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| ||||||||||| | ||| | || ||||||||| Sbjct 12110 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 12169 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| |||| ||| | | | | || ||| || ||||| |||| |||||| || || Sbjct 12170 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 12229 >seq779 Length=1215 Score = 141 bits (156), Expect = 1e-28 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 32 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 91 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||||| Sbjct 92 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 151 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||| |||| ||| | ||| | | | || ||| | ||||| |||| |||||| || | Sbjct 152 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 210 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| || || || || || ||||| ||||| ||| Sbjct 211 TGCCAGTGAGGGTCTTCACGAAGATCTGCATCTTG 245 >seq1233 Length=22992 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 119 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 178 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| ||||||||||| | ||| | || ||||||||| Sbjct 179 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 238 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| |||| ||| | | | | || ||| || ||||| |||| |||||| || || Sbjct 239 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 298 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || ||||| ||||| Sbjct 299 CCCCGTCAGAGTCTTCACGAAGATCTGCAT 328 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 347 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 406 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| ||||||||||| | ||| | || ||||||||| Sbjct 407 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 466 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||| |||| ||| | ||| | | | || ||| | ||||| |||| |||||| || | Sbjct 467 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 525 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| || || || || || ||||| ||||| ||| Sbjct 526 TGCCAGTGAGGGTCTTCACGAAGATCTGCATCTTG 560 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 4940 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 4881 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| ||||||||||| | ||| | || ||||||||| Sbjct 4880 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 4821 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| |||| ||| | | | | || ||| || ||||| |||| |||||| || || Sbjct 4820 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 4761 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| || || || || || ||||| ||||| || Sbjct 4760 GCCAGTGAGGGTCTTCACGAAGATCTGCATCTT 4728 >seq3516 Length=19581 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||||||||| || | || |||||||| ||||| |||||||| || || ||||| | Sbjct 16838 ACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 16779 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || ||||||||||||||||| |||| ||||||||||| | ||| Sbjct 16778 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 16731 >seq42 Length=28877 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||||||||| || | || |||||||| ||||| |||||||| || || ||||| | Sbjct 26115 ACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 26056 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || ||||||||||||||||| |||| ||||||||||| | ||| Sbjct 26055 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 26008 >seq2466 Length=31792 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||||||||| || | ||||||||||| | || Sbjct 25634 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGG 25575 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | |||||||||| ||| |||| ||||| ||| | | | || ||| | ||||| Sbjct 25574 ATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CGTTGTCAATCGAGTCCGAGGGCTCCAC 25516 Query 46546 ATCCACCGTGATGGTTTTGCC 46566 || | ||||||||| ||||| Sbjct 25515 GTCGAGCGTGATGGTCTTGCC 25495 >seq3432 Length=18754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCA--ATGTACTCTCCTTTTGGATATTGTAGTCG 46423 |||||| | ||| |||| ||||||||||| |||| | | || | ||| |||||| Sbjct 7873 GCCTCCGCGTAACCGCAGCACCAGATGCAGGATGTCCCCA--TTCTTGATCGCGTAGTCC 7816 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || |||||||| | || |||||| || |||||||||| | | |||||||||||| | | Sbjct 7815 GAAAGAGTGCGACCATCTTCGAGCAGCCTGCCGGCGAAGACGAGGCGCTGCTGGTCTGGC 7756 Query 46484 GGCACGCTCTCCTT 46497 || | || ||||| Sbjct 7755 GGGATGCATTCCTT 7742 >seq6148 Length=6489 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||||||||| || | ||||||||||| | || Sbjct 330 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 271 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| ||| |||| ||||| | | | || ||| | ||||| Sbjct 270 ATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATCGAGTCCGAGGGCTCCACG 211 Query 46547 TCCACCGTGATGGTTTTGCC 46566 || | ||||||||| ||||| Sbjct 210 TCGAGCGTGATGGTCTTGCC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565154313722520