Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1363 125 9e-24 seq2060 118 1e-21 seq6130 87.8 2e-12 >seq1363 Length=31850 Score = 125 bits (138), Expect = 9e-24 Identities = 198/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| |||||||| | | |||||| | || || | |||||| | Sbjct 9637 CTCATCGACACGTACATTAAGGACGCGGTGGAGAAGGATCATCTGCTGCGCGCCATCGAG 9696 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || | || || | ||||| || |||||| | ||||||| || | ||| Sbjct 9697 ACCATCCCGTGCGTGACCAAGAAGGCCAGTTGGGCGCTCAAGTGGTGCGACTCGCGCTCG 9756 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 || | ||||||||| | || || || ||| || || || ||||||||||| || Sbjct 9757 GCCTCGTATGCTGAGCGTTTGTTGGCCTTCGCGGCCGTGGAAGGCATCTTCTTCTCCGGC 9816 Query 102228 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 ||||| ||| | || | ||||| |||||||| || |||||||| || ||| |||||||| Sbjct 9817 TCCTTTTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCC 9876 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| ||| ||||||||| || | ||| || ||||| Sbjct 9877 AACGAGCTGATCAGTCGTGACGAAGGCATGCACTGCGACTTTGC 9920 >seq2060 Length=42285 Score = 118 bits (130), Expect = 1e-21 Identities = 188/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 102105 ||||| |||| ||| |||||||| |||| |||||| | || || | |||||| Sbjct 32677 CTCATCGACACGTACATTAAGGACACGGTG--GAGAAGGACCATCTGCTGCGCGCCATCG 32620 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 102165 | || | || || | ||||| || |||||| | ||||||| || | | Sbjct 32619 AGACCATCCCGTGCGTGACCAAGAAGGCCAGTTGGGCGCTCAAGTGGTGCGACTCGCGCT 32560 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 || || | ||| ||||| | | || || ||| || || || ||||||||||| | Sbjct 32559 CGGCCTCGTATGCGGAGCGTTTGCTGGCGTTCGCGGCCGTGGAAGGCATCTTCTTCTCGG 32500 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||||||||| | || | ||||| |||||||| || |||||||| || ||| |||||| Sbjct 32499 GCTCCTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCT 32440 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||| ||| ||||||||| || Sbjct 32439 CCAACGAGCTGATCAGTCGTGACGAAGG 32412 >seq6130 Length=61013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 285/431 (66%), Gaps = 24/431 (6%) Strand=Plus/Minus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || || ||||| ||||| | |||||||| || | ||| |||| | || | |||| | Sbjct 56498 CCTGTGCCGATGCCCTCAGCTCCGTTCACAAGCAGCATCGGGATGATCGGTACGTAGTGG 56439 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC-TCT-CG 175958 ||||||| | |||| ||||||||||| ||| || | || || || ||| || Sbjct 56438 ACTGGCTCCACGGGGAAGCCATCGTCATCGGCGTAGGCCAGCAATGCGTCGTCGTCTTCG 56379 Query 175959 GATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 176017 | | || | || | | ||| || | | || |||||||| | || | Sbjct 56378 GGGAACAG--CAAACGCGTGTGCTTCTGCAA-CAGCGTGAAGATATAACGCGGACTGGCA 56322 Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 || ||||| || ||| || ||||| || |||||||| |||| | || || | Sbjct 56321 GCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACTGACCCGACGGATAGAGCAGCGGCAGG 56262 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTC 176136 ||||| || |||| | |||| | ||||| ||||| ||||| | || || ||||| || Sbjct 56261 TTGTTGGAGCCCACGAAGTCCTGCGCCATGTTGACGATCGTCGAGTGC-AGCGAGACCTC 56203 Query 176137 ACCGTGGTGGTACGCACTCT--TCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATC 176194 |||||| ||||| || | | || |||| | || |||||||||||||||| |||| | Sbjct 56202 ACCGTGATGGTAAGCCGTGTGTTCGCTGCAATAAC--CCGCCAACTGCGCCACCTTCACC 56145 Query 176195 TCA----TC--CTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGC 176248 ||| || |||| | ||| | ||| ||| | | ||||| || ||||| | Sbjct 56144 TCACGAGTCAACTTGCGCTTC------AGACAGGCGAAGAGCACCTTACGCTGCGACACC 56091 Query 176249 TTGAGACCATC 176259 ||||| ||||| Sbjct 56090 TTGAGGCCATC 56080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620650056808720