Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11896 125 8e-24 seq4274 123 3e-23 seq848 120 4e-22 seq1363 116 4e-21 seq2060 102 1e-16 seq9255 98.7 1e-15 >seq11896 Length=64517 Score = 125 bits (138), Expect = 8e-24 Identities = 325/488 (67%), Gaps = 27/488 (6%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| || || || || || | || | || ||||||||| | ||||| Sbjct 10910 ATCTGCCGGTCGAATCGGCCGGGACGCAGGATGGCCTTGTCTAGAATATCGGCGCGGTTC 10851 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 || |||||| || || | ||| ||| | || ||| |||||||| || || Sbjct 10850 GTGCCGGCAAGCACCACCACGCC---CTCGCTCGAGTTGAAGCCGTCCATCTCGACCAGC 10794 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC---- 11663 |||||||||| ||| | |||||||| |||||| ||| | || | ||| Sbjct 10793 AGCTGGTTGAGCGTGTTCTCACGCTCGTCGTTGCCGCCCGAGAAGTTGCC-CTTGCTACG 10735 Query 11664 CGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 ||||||| | || ||||| ||||| |||||||| ||||| ||||| ||||| Sbjct 10734 CGAACGCGCC------ACGGCGTCGATCTCGTCGATGAAGACGATGCACGGCGCATTGGC 10681 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 || || | | || || ||||| ||||| || || ||||| ||||||||||||| Sbjct 10680 CCGAGCTTCCTTAAACAGGTCACGCACACGGGACGGACCGACACCGACGAACATCTCAAT 10621 Query 11784 GAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||||| | | | || | ||||| ||| || || | | || || || | || | Sbjct 10620 GAAGTCCGAGCCGGAGATGCTGAA-GAACGGCACGCTGGCTTCGCCGGCCGTAGCCTTGG 10562 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | || || |||||||||||||| || | || | || | ||||| |||||||||| Sbjct 10561 CCAGCAGCGTCTTACCCGTACCGGGCGGGCCGACCAGCAACGCGCCCTTCGGGATCTTGG 10502 Query 11903 CA-CCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCC 11961 || ||| ||| | |||||| | || ||||||||||| | |||| | ||| Sbjct 10501 CACCCAGCTCC-GTGAAGCGCTTCTGGTTGCGCAGGAAGTCCACGAACTCCATGATCTCC 10443 Query 11962 TCCTTGGC 11969 | |||||| Sbjct 10442 TTCTTGGC 10435 >seq4274 Length=4240 Score = 123 bits (136), Expect = 3e-23 Identities = 293/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 110608 TCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACG 110666 || || | ||||||||| || ||||| | ||||| ||| |||| ||||| || || | Sbjct 903 TCCACGCGCTTCATGAAAAGATCAGGCACCCACAACGCGTAGAACAGGTCGCGCGCGCGG 962 Query 110667 AGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCA 110726 | || | | || ||||| ||| || ||||| || || | | || | |||||| Sbjct 963 TGGAGCT-CGTTGCCGTGGTTCTTGCGCAGGTCCAAGAACTCGAACACGTCGGCGTGCCA 1021 Query 110727 TGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCC-TGGTTAACATAGCG 110783 || || || |||| |||| ||| ||||| || ||| |||| |||| || ||||| Sbjct 1022 CGGCTCCAGGTAGATGGCGAAGGAGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCG 1081 Query 110784 TGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACC 110843 || ||| | ||||| || | ||||| || || || |||| ||| || || || || Sbjct 1082 CGCCGTGTCGTTGAACACACGCAGCATGGGGATGATGCCATTGGACGAGCCGTTGGTGCC 1141 Query 110844 CCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCA 110903 | || | || |||| || |||| ||| ||| || || || || |||||||| Sbjct 1142 GCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATACTGATGCCGATGCCGCCCGCCCA 1201 Query 110904 CTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTT 110963 ||| || ||||||| |||| || | || || || ||||| || || ||| Sbjct 1202 CTTGGAGATGCAGGCACACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTG 1261 Query 110964 GTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGT 111023 |||| | || ||||| || |||| ||| || || ||||| || || ||||| || || Sbjct 1262 CATGGCCAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGT 1321 Query 111024 AGGTGTCGCATGAATGAA 111041 || || || || |||| Sbjct 1322 GGGCGTGGCGTGCGTGAA 1339 >seq848 Length=74974 Score = 120 bits (132), Expect = 4e-22 Identities = 826/1315 (63%), Gaps = 38/1315 (3%) Strand=Plus/Plus Query 109743 GCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTG 109802 ||| ||| ||| ||||| | |||||| || |||| || ||| |||||||| ||||| || Sbjct 16331 GCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATACTCTCGTTGTTGCCCAGGATCTG 16390 Query 109803 TGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT 109862 || ||||| || |||||||| || || | || || ||| || || || | | | Sbjct 16391 CGCCGTGGACGCCGTGGGCATCGGCGCGACCAGCAGCGAGTTGCGAAGCCCGTGCTGCGC 16450 Query 109863 TACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCA 109922 ||| | || || |||| || | |||| | ||| | || ||| Sbjct 16451 CACCTTGGCCTTCAGAGCCGCCCAGTCCCAGAGACCCGACGACGGCGTCACGCC---CCA 16507 Query 109923 CATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCC 109982 ||| || || | | |||| ||||| || || | | | ||||||| | ||| Sbjct 16508 CATGTCGAACTGGAAGATGCCCTTGCTGGCAGGGGAGCCTTCGTACGTCTCGTAGGGCCC 16567 Query 109983 CTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAAT 110042 ||| | | ||| | || || | ||| | || || | || || ||||| || || Sbjct 16568 TTCATCTTTGGCGATTTCCATGGACGTCTCCATGGCGGCGTAGTAGATGGTCTCGAAGAT 16627 Query 110043 ATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAA 110098 | || |||| || | ||| ||| ||||| | |||| ||| | || | | Sbjct 16628 GTTC---TTGTTGAGCTCCCGCGCCTCGGCACTCTCGAACGCGAAGTCCATCAGGA-TGA 16683 Query 110099 ACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC 110158 | | ||||| || ||||| ||||||| || | |||||| || |||||| || | Sbjct 16684 AGGCGTCCGCCAGTCCCTGTACACCGATGCCCACGGGGCGGTGGCGCATGTTGGACTTGC 16743 Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 | || | ||||| || ||||| |||||||||| || || || ||| || Sbjct 16744 GCGCCTCTGGCACGGGATAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGCGTGACCA 16803 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATT 110278 |||||||| || | || || | ||| | ||| | || | ||| || | | Sbjct 16804 CCTTCGTGACCTCGTACAGCTTCTTGTAGTTGAA----TACGCCGTCTTCC--ACGAACT 16857 Query 110279 TGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 |||| || || | |||||| || |||||||| | ||| || | ||||| |||| Sbjct 16858 TGGGCAGCGCCACAGACGCCAGGTTGCACACGGCCACCTCATCGGGCGCCGTGTACTCCA 16917 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTA---ATGACACCCAAGTTCTTCTGATTCGATT 110395 | || ||||||||| ||| ||| |||| ||||| ||| || || | Sbjct 16918 TGACCTCGCAGCACAAGTTG---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACT 16974 Query 110396 TGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGA 110455 || |||| || ||||| | |||||| | || || || || |||| | | | Sbjct 16975 TGCGGTTGGCCGCGTCCTTGAACAGCATGAAGGGAACGCCCGTCTCGATCTGCGCGTCCA 17034 Query 110456 GAATGGCCTTCCATACATCGGCGGCGGG--GACAGT--TGCGTTAGCGAGACCTTCCTCC 110511 | ||||| ||| || | || ||| | || || |||| ||| | ||||| | Sbjct 17035 GGATGGCGAACCA--CAGCTGCTGCGCGTTGATGGTCTTGCGG--GCGCGGCCTTCGCGC 17090 Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGC 110570 |||||||| ||||| |||| || || | || | ||| | | || || ||| Sbjct 17091 TCGTACTTCTCGTACAGCGCCTCGAACTCGTCGCCCCAGCACTTGT-ACAGGTCCGGCGC 17149 Query 110571 CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTC 110630 | || ||| || || || ||| || || | || || | |||||||||||| || Sbjct 17150 TTCGTTGGGGCAAAACAGACTCCACTTGCCGTTGGCTTCCACGCGCTTCATGAACAGATC 17209 Query 110631 AGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTTGA 110689 ||| | ||||| ||| |||| ||||| || || | | | || | || ||||| Sbjct 17210 AGGCACCCACAACGCGTAGAACAGGTCGCGCGCGCGGTGGAGC-TCGTTGCCGTGGTTCT 17268 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 ||| || |||| || || | | || | |||||| || || || |||| |||| || Sbjct 17269 TGCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGG 17328 Query 110750 ATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 | ||||| || | || |||||| || ||||| || ||| | ||||| || | | Sbjct 17329 AGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACACGCA 17388 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866 |||| || || || |||| ||| || || || || | || | || |||| | Sbjct 17389 GCATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCGCGGATGTAGCTGTTGGTGGCGC 17448 Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTG 110926 | |||| ||| || || || || || || |||||||| || ||||||| Sbjct 17449 GGATGTTGTGCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCACACTGCT 17508 Query 110927 TGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAG 110986 |||| || | || || || ||||| || || ||| |||| | || ||||| || | Sbjct 17509 TGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACG 17568 Query 110987 ACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 ||| ||| || || ||||| || || ||||| || || || || || || |||| Sbjct 17569 ACAGCTGCGGCCGCGGCGTGCCGGCGTTGAACAGCGTGGGCGTGGCGTGCGTGAA 17623 >seq1363 Length=31850 Score = 116 bits (128), Expect = 4e-21 Identities = 189/267 (71%), Gaps = 5/267 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || ||| ||| ||||| || ||||| || ||||||||||| || | ||| Sbjct 9902 CCTTCGTCACGACTGATCAGCTCGTTGGAGAAGCTGAGGCCAGGCATGAGGCCGCGCTTC 9843 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 9842 TTCAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATGCCTTCCACGGCCGCGAAG 9783 Query 119634 GCGAATAGACGCTCAGCAAA--AGGTCGAG-ACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || || | |||||||||| | ||| |||| | |||| |||||||||| ||||| || Sbjct 9782 GCCAACAAACGCTCAGCATACGAGGCCGAGCGCGAGTCGCACCACTTGAGCGCCCAACTG 9723 Query 119691 GCCTT-ACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749 ||||| | || | ||| |||| || | |||||| | || || | ||| || | Sbjct 9722 GCCTTCTTGGTC-ACGCACGGGATGGTCTCGATGGCGCGCAGCAGATGATCCTTCTCCAC 9664 Query 119750 ACCATCCTTAATATATTTATCAATGAG 119776 | |||||||| || | || ||||| Sbjct 9663 CGCGTCCTTAATGTACGTGTCGATGAG 9637 >seq2060 Length=42285 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || ||| ||| ||||| || ||||| || ||||||||||| || | ||| Sbjct 32412 CCTTCGTCACGACTGATCAGCTCGTTGGAGAAGCTGAGGCCAGGCATGAGGCCGCGCTTC 32471 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || ||||||||||| ||||| ||||| Sbjct 32472 TTCAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCCACGGCCGCGAAC 32531 Query 119634 GCGAATAGACGCTCAGCAAA--AGGTCGAG-ACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || | | |||||| ||| | ||| |||| | |||| |||||||||| ||||| || Sbjct 32532 GCCAGCAAACGCTCCGCATACGAGGCCGAGCGCGAGTCGCACCACTTGAGCGCCCAACTG 32591 Query 119691 GCCTT 119695 ||||| Sbjct 32592 GCCTT 32596 >seq9255 Length=18854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 ||| || || ||||| || || ||||| | ||||| ||||| |||| |||||| | || Sbjct 16311 CTTGCCTCGCAGTGGGAAGACGCCATAGTTGTCTCTTCCCACCACGGCCAGACCACCCAC 16370 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGC 168548 ||||| || || || |||||||| || |||||||| | || || | | | || || Sbjct 16371 AGCGACCGTCTTGGCAGAATCACCTTCGGTCACGATCAACGTGCAGTGTTTACCCTTCGC 16430 Query 168549 CGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 || ||||| | |||||||||||||| || ||||| || || Sbjct 16431 TGTGCCAGCATGGTTCGCATCGTCCAGCTTCGGGATCCCCGT 16472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588888382457800