Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2060 96.9 4e-15 seq9815 87.8 2e-12 seq7340 87.8 2e-12 seq1363 87.8 2e-12 seq551 87.8 2e-12 >seq2060 Length=42285 Score = 96.9 bits (106), Expect = 4e-15 Identities = 327/500 (65%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 32106 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 32165 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| ||||| | || | ||| |||| | || || || || Sbjct 32166 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTGGACACGCCCAGCGAGTAC-AGCAGGCG 32224 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | || Sbjct 32225 GTCGGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 32284 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | || || | |||| | |||| | | ||| ||| | || || || | ||||||| Sbjct 32285 A-GGCAGCGAGTCCCGCACGAACTCGTGCTCGATCACCACGGCGTCGCGGATAATGGCGT 32343 Query 117224 GGATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | || || || || | | || | | | ||| || ||| || Sbjct 32344 GCACACGCTCCTCCGGCAGCTTGTTCACGA-GCTTCGAGTACATGAGG--CA-GGCGAAG 32399 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| | || || || || || || || || ||||||| ||||| |||||| Sbjct 32400 TCGCAGTGCATGCCTTCGTCACGACTGATCAGCTCGTTGGAGAAGCTGAGGCCAGGCATG 32459 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||||| ||| | || | |||||| || || ||||||||||| || ||| Sbjct 32460 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCC 32519 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTC 117459 || ||| ||||| | | ||||| || | ||| || | ||| |||| || Sbjct 32520 ACGGCCGCGAACGCCAGCAAACGCTCCGCATACGAGGCCGAGCGCGAGTCGCACCACTTG 32579 Query 117460 ATTGCCCATTTCGCCTTCTT 117479 | ||||| | |||||||| Sbjct 32580 AGCGCCCAACTGGCCTTCTT 32599 >seq9815 Length=1825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 129 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 188 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 189 CCGGTAGGAGCTT 201 >seq7340 Length=2257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2170 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2111 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 2110 CCGGTAGGAGCTT 2098 >seq1363 Length=31850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 117307 ATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATA 117366 || || || || ||||||| ||||| |||||||| || |||||||||| ||| | || Sbjct 9887 ATCAGCTCGTTGGAGAAGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATG 9828 Query 117367 GCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCG 117426 | ||| || || |||||||||||||| || ||||| ||| || || || | ||||| Sbjct 9827 GAGCAAAAGGAGCCGGAGAAGAAGATGCCTTCCACGGCCGCGAAGGCCAACAAACGCTCA 9768 Query 117427 GCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTCGCCTTCTT 117479 || | ||| || | ||| |||| || | ||||| | |||||||| Sbjct 9767 GCATACGAGGCCGAGCGCGAGTCGCACCACTTGAGCGCCCAACTGGCCTTCTT 9715 >seq551 Length=7289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 156 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 97 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 96 CCGGTAGGAGCTT 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589893032981240