Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8319 246 2e-60 >seq8319 Length=37522 Score = 246 bits (272), Expect = 2e-60 Identities = 441/636 (69%), Gaps = 16/636 (3%) Strand=Plus/Plus Query 29760 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 29819 ||| ||||| || || | ||| || | |||||| || |||||| |||||||| | Sbjct 9857 CAGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTT 9916 Query 29820 CAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29879 ||| || ||||| ||||| || | | ||||| |||||||| || | || || | || Sbjct 9917 CAGATACACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCAC 9976 Query 29880 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 29939 || |||| | |||||| || | ||| ||||||||||| |||||||| || ||||| Sbjct 9977 TTGGGCCACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCC 10036 Query 29940 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29999 ||| || |||| | |||||| | |||||||| ||||| ||||| |||||| ||||| Sbjct 10037 CATATCGGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTG 10096 Query 30000 ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30059 || | |||||||||| || || ||||| | || || |||||||| ||| | Sbjct 10097 GCAGAACATGTGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGA 10156 Query 30060 CACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTGATG-AGGTCCACGGCGTTTTG 30113 | | ||| || | ||| || | | |||| || || | | | |||| Sbjct 10157 AAGCACGATCCGACGGTCGCTCGGATTCGTTCGTAGCTTCTGAATGACTTCGGC------ 10210 Query 30114 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30173 ||| || ||||| || || | ||| || || |||||||||||||| |||||||| Sbjct 10211 CAGTTGGTCCACGCCTTGACCAGTGTAATCAGCGTGCATGTCCGTGTACTTGGCTCCGAA 10270 Query 30174 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30233 ||| | ||||||||| ||||| ||||| ||||| || ||| ||||| | ||| |||||| Sbjct 10271 ATGGCGCCACTGGAAGCCGTAAACCGGCCCCAGATCGCCCGTTTCCC-GAGCTTGAAGCC 10329 Query 30234 C-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT-CG 30291 | | |||||| | | || | || |||||| |||||||||| | | |||||| | Sbjct 10330 CTCGACTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTCTGCT 10389 Query 30292 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30351 | | | | | ||| ||| || || | |||||||| |||||||| | ||| | Sbjct 10390 GCAACGTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCG 10448 Query 30352 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30387 ||| || || | |||||||||||| || |||||| Sbjct 10449 CGCCAGAACACGCGCTTGGTCGTGAGCAGAGGAAAC 10484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408558332698673