Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1233 114 1e-20 seq6703 113 3e-20 seq5117 100 2e-16 seq10786 98.7 8e-16 seq1268 98.7 8e-16 seq779 89.7 4e-13 >seq1233 Length=22992 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || ||||| ||| || || || ||||| || Sbjct 101 GCCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 160 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 161 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 220 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || || || || ||| | | || || |||| |||||| Sbjct 221 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 280 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| ||| || || || |||||||| Sbjct 281 GTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 328 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || ||||| ||| || || || ||||| || || | ||| Sbjct 4948 AGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 4889 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| || || | || | ||||||| Sbjct 4888 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 4829 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || ||| | | || || |||| |||||| |||| ||| Sbjct 4828 TTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 4769 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || | || || || || ||||||||| Sbjct 4768 ATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATC 4730 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || ||||| ||| || || || ||||| || Sbjct 329 GCCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 388 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 389 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 448 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || || || || || | | || || || | |||||| Sbjct 449 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 508 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 |||| ||| ||||| || || || | || || || || ||||||||| || || Sbjct 509 GTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTTGAGT 563 >seq6703 Length=12229 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || ||||| ||| || || || ||||| || Sbjct 11805 CCGCCACGAAGACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11864 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 11865 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 11924 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| || || || || ||| | | || || |||| |||||| Sbjct 11925 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 11984 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| ||| || || || |||||||| Sbjct 11985 TCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 12031 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || ||||| ||| || || || ||||| || Sbjct 12032 GCCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 12091 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 12092 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 12151 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || || || || ||| | | || || |||| |||||| Sbjct 12152 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 12211 Query 48719 CTCCACCGTAATCGTTTT 48736 |||| ||| ||||| || Sbjct 12212 GTCCAGCGTGATCGTCTT 12229 >seq5117 Length=12130 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || Sbjct 11901 GCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 11960 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 11961 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 12020 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || || || || || | | || || || | |||||| Sbjct 12021 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 12080 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| ||| || || || |||||||| Sbjct 12081 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 12128 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || || || ||| || || || ||||| || Sbjct 11674 CCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11733 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 11734 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 11793 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| || || || || || | | || || || | |||||| Sbjct 11794 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 11853 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| ||| || || || |||||||| Sbjct 11854 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 11900 >seq10786 Length=3597 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || Sbjct 14 GCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 73 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 74 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 133 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || || || || || | | || || || | |||||| Sbjct 134 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 193 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||| ||||| || || |||| ||| || || || ||||||||| Sbjct 194 GTCCAGCGTGATCGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATC 242 >seq1268 Length=19578 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || || || ||| || || || ||||| || Sbjct 229 CCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 170 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 169 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 110 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| || || || || || | | || || || | |||||| Sbjct 109 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 50 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| ||| || || || |||||||| Sbjct 49 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 3 >seq779 Length=1215 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || Sbjct 14 GCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 73 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||| |||||| ||||| || ||||| ||||| || || | || Sbjct 74 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 133 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || || || || || | | || || || | |||||| Sbjct 134 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 193 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| ||| ||||| || || || | || || || || ||||||||| || Sbjct 194 GTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTTG 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380882347501023