Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_020158.1 Length=102319 Score E Sequences producing significant alignments: (Bits) Value seq4218 86.0 4e-12 seq1701 86.0 4e-12 >seq4218 Length=55731 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 35146 GATGGCGTCTGCGATTTGGTTCGTCAGGCGCTCCTGCACCTGCGGGCGACGAGCGTA-TC 35204 |||||||| ||||| || |||||||||||||||||||||||| | || || ||| | | Sbjct 6354 GATGGCGTTGGCGATCTGCTTCGTCAGGCGCTCCTGCACCTGCAGTCGCCGCGCGAACAC 6295 Query 35205 CCCGCACGACTCGCGCCAGTTTCGACAGGCCCACGACTTCCTCGTCCGGGATATACCCGA 35264 | || || || |||||||| || || |||| || | ||| |||||| || |||| Sbjct 6294 CTCGGAC-ACCCGCGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCCGA 6236 Query 35265 CGTGAGCGCGTCCTCG-GAACGGGAGGAAGTGGTGCGCACACATG 35308 ||| | | | | || |||||| | | ||||||| | |||||| Sbjct 6235 TGTGCAC-CTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG 6192 >seq1701 Length=53897 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 35146 GATGGCGTCTGCGATTTGGTTCGTCAGGCGCTCCTGCACCTGCGGGCGACGAGCGTA-TC 35204 |||||||| ||||| || |||||||||||||||||||||||| | || || ||| | | Sbjct 49556 GATGGCGTTGGCGATCTGCTTCGTCAGGCGCTCCTGCACCTGCAGTCGCCGCGCGAACAC 49615 Query 35205 CCCGCACGACTCGCGCCAGTTTCGACAGGCCCACGACTTCCTCGTCCGGGATATACCCGA 35264 | || || || |||||||| || || |||| || | ||| |||||| || |||| Sbjct 49616 CTCGGAC-ACCCGCGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCCGA 49674 Query 35265 CGTGAGCGCGTCCTCG-GAACGGGAGGAAGTGGTGCGCACACATG 35308 ||| | | | | || |||||| | | ||||||| | |||||| Sbjct 49675 TGTGCAC-CTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG 49718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327248527863080