Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2060 96.9 4e-15 seq1363 87.8 2e-12 >seq2060 Length=42285 Score = 96.9 bits (106), Expect = 4e-15 Identities = 327/500 (65%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGC 65082 |||||||| | ||||| | || |||| ||| | || ||| | || ||||| Sbjct 32599 AAGAAGGCCAGTTGGGCGCTCAAGTGGTGCGACTCGCGCTCGGCCTCGTATGCGGAGCGT 32540 Query 65083 CTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTAT 65142 | | ||||| ||| ||||| || ||||||||||| || || |||||| | || | Sbjct 32539 TTGCTGGCGTTCGCGGCCGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTC 32480 Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGA 65202 ||| |||||||||| || |||||||| ||||| ||||||| || || || || || Sbjct 32479 TGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGATCAGTCGT 32420 Query 65203 GATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACCC 65262 || || || | ||| || || ||| || ||| | | | || | | || Sbjct 32419 GACGAAGGCATGCACTGCGACTTCGCC-TG--CCTCATGTACTCGAAGC-TCGTGAACAA 32364 Query 65263 ACTACC----GAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 || || || | | |||||||| | || || || | ||| ||| | | ||| Sbjct 32363 GCTGCCGGAGGAGCGTGTGCACGCCATTATCCGCGACGCCGTGGTGATCGAGCACGAGTT 32304 Query 65319 CATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377 | | |||| | || || ||| | || ||||| |||||||| | | |||| | ||| Sbjct 32303 CGTGCGGGACTCGCTGCC-TGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGT 32245 Query 65378 ACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGGAAC 65436 ||||||||| ||| | || || || || || | |||| ||| | || | ||| Sbjct 32244 ACATTGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGTCCAAGATCTACAAC 32186 Query 65437 GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTT 65496 || ||||| || || |||| ||||| | || || | || |||||||||||||| Sbjct 32185 GCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTC 32126 Query 65497 GAGAAGCGAGTTGGGGACTA 65516 |||||||| || || || || Sbjct 32125 GAGAAGCGCGTGGGCGAGTA 32106 >seq1363 Length=31850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGC 65082 |||||||| | ||||| | || |||| ||| | || ||| | || ||||| Sbjct 9715 AAGAAGGCCAGTTGGGCGCTCAAGTGGTGCGACTCGCGCTCGGCCTCGTATGCTGAGCGT 9774 Query 65083 CTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTAT 65142 | || || || ||| ||||| || |||||||||||||| || || ||| | || | Sbjct 9775 TTGTTGGCCTTCGCGGCCGTGGAAGGCATCTTCTTCTCCGGCTCCTTTTGCTCCATCTTC 9834 Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 ||| |||||||||| || |||||||| ||||| ||||||| || || || || Sbjct 9835 TGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGAT 9887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596480852814880