Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7319 87.8 5e-12 seq6576 84.2 6e-11 >seq7319 Length=2445 Score = 87.8 bits (96), Expect = 5e-12 Identities = 183/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| | | ||||| || || || ||||| | || || || || ||| Sbjct 2269 TCCATAGCCTTCACCAGCCGACGTTGGATGTATCCAGTCTCGGCAGTCTTGACGGCAGTA 2210 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| || || | ||||||||||| || |||||||| | ||| | ||| ||| || || Sbjct 2209 TCAATCAGTCCTTCGCGACCACCCATGGCGTGGAAGAAAAACTCCTGCGG-CGTCAGACC 2151 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | ||| |||| ||||| ||||| ||| || |||| ||| | Sbjct 2150 CTTCAGGTACGAGTTCTCCACGAAGCCACGACTCTCCGGACCCAGGTCGTCTTTGCCGTA 2091 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||| || || || | || | | ||||| || || |||||||| || || ||||| || Sbjct 2090 GTGCGGTAGCGTACGGTGGTTGAAACCGTACGGAATCCGCTTTCCCTCGACATTCTGTTG 2031 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| |||| ||| |||||||| || || Sbjct 2030 CCCCACACACGCAATAATCTGCGAGATGTT 2001 >seq6576 Length=23117 Score = 84.2 bits (92), Expect = 6e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || |||||||| || || | ||||||||||| || |||||||| | ||| Sbjct 2224 GTCTTGACGGCAGTATCAATCAGTCCTTCGCGACCACCCATGGCGTGGAAGAAAAACTCC 2165 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 | ||| ||| || ||| | | ||| |||| ||||| ||||| ||| || Sbjct 2164 TGCGG-CGTCAGACCCTTCAGGTACGAGTTCTCCACGAAGCCACGACTCTCCGGACCCAG 2106 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| ||| |||| || || || | || | | ||||| || || |||||||| Sbjct 2105 GTCGTCTTTGCCGTAGTGCGGTAGCGTACGGTGGTTGAAACCGTACGGAATCCGCTTTCC 2046 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || ||||| || |||| |||| ||| |||||||| || || Sbjct 2045 CTCGACATTCTGTTGCCCCACACACGCAATAATCTGCGAGATGTT 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471593174952637