Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq9306 131 8e-26 seq10490 116 2e-21 >seq9306 Length=2507 Score = 131 bits (144), Expect = 8e-26 Identities = 381/585 (65%), Gaps = 9/585 (2%) Strand=Plus/Plus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 ||||| |||||||||||||| || ||| ||| || ||| | ||| || || | Sbjct 1702 CGGGTTGTGGAGATCTACGGGCCGGAGAGTTCGGGCAAGACCACGCTGGCGCTGAGCTGC 1761 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 67747 ||||| | || |||||| | ||| ||||| |||||||||||| ||| | || Sbjct 1762 GTGGCTGAGGCGCAGAAGTTGGACGGCGTGTGCGCCTTCATCGACGCCGAGCATGCCATC 1821 Query 67748 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 67807 || | | |||||| ||| || || ||||| | ||| || || ||||| Sbjct 1822 GATGCGCACTACGCCAAGGCTCTGGGCGTGGACATTGACGCGCTGTACGTCTCCCAGCCG 1881 Query 67808 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 67867 ||| | ||||| |||| ||||| |||| || ||| || || |||| ||| | Sbjct 1882 GACTCAGGCGAAGAGGCGCTGGAAATCGCCGATACGCTCATCCGCTCAGGCGCGGTGGAC 1941 Query 67868 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 67927 || | || ||||| ||||| || || ||||| || || ||||| || || || || Sbjct 1942 CTCGTGGTGCTGGACAGCGTGGCAGCTCTCGTGCCTCGTGCCGAGCTGGAGGGCGAGATG 2001 Query 67928 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 67987 || ||| ||| ||| ||||| || || || ||| || || ||||||| || || Sbjct 2002 GGCGACCAGCAGATCGCACTGCAGGCTCGGCTTATGAGCCAAGCTCTGCGCAAACTCACA 2061 Query 67988 GGCACGATTGCCAGCACCAA---CACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 68044 ||| || | ||| | || ||| || | | | |||| ||| | ||| |||| Sbjct 2062 GGCTCGCTGTCCAAGTCGAATTGCAC---CATCATCTTCCTGAACCAGATCCGCCAGAAA 2118 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 | || | | | || |||| || ||| || | || || | ||| || |||| | Sbjct 2119 GTGGGGATCAT---CTTCGGCTCGCCTGAAGTGACTTCGGGCGGCACGGCACTCCGCTAC 2175 Query 68105 TACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCT 68164 ||||| || || ||| ||||| |||| | | ||| | |||||||| || || Sbjct 2176 TACGCATCTGTCCGTCTGGATATCCGTCGCAAGGCCGCTATTAAGGAAGGTGACCAGATC 2235 Query 68165 GTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 68209 || |||||| ||| ||| ||||| | ||||||||| |||||| Sbjct 2236 GTGGGCAACGAGACGGTCGTCAAGGTGGCCAAGAACAAACTGGCG 2280 >seq10490 Length=9071 Score = 116 bits (128), Expect = 2e-21 Identities = 378/585 (65%), Gaps = 9/585 (2%) Strand=Plus/Plus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 ||||| |||||||||||||| || ||| ||| || ||| | || || || | Sbjct 1724 CGGGTTGTGGAGATCTACGGGCCAGAGAGTTCGGGCAAGACCACACTGGCGCTGAGCTGC 1783 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 67747 ||||| | || |||||| | ||| ||||| |||||||||||| ||| | || Sbjct 1784 GTGGCTGAGGCGCAGAAGCTGGACGGCGTGTGCGCCTTCATCGACGCCGAGCATGCCATC 1843 Query 67748 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 67807 || | | |||||| ||| || || ||||| | ||| || || |||||| Sbjct 1844 GATGCGCACTACGCCAAGGCACTGGGCGTGGACATTGACGCGCTGTACGTCTCGCAGCCG 1903 Query 67808 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 67867 ||| | ||||| |||| ||||| |||| || ||| || || || | || | Sbjct 1904 GACTCAGGCGAAGAGGCACTGGAAATCGCCGATACGCTCATCCGCTCAGGTGCTGTGGAC 1963 Query 67868 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 67927 || | || ||||| ||||| || || ||||| || || ||||| || || || || Sbjct 1964 CTCGTGGTGTTGGACAGCGTGGCAGCTCTCGTGCCTCGTGCCGAGCTGGAGGGCGAGATG 2023 Query 67928 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 67987 || ||| ||| ||| ||||| || || || ||| || || |||| || || || Sbjct 2024 GGCGACCAGCAGATCGCACTGCAGGCTCGGCTTATGAGCCAAGCTCTGCGTAAACTCACA 2083 Query 67988 GGCACGATTGCCAGCACCAA---CACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 68044 ||| || | ||| | || ||| || | | | |||| ||| | ||| |||| Sbjct 2084 GGCTCGCTGTCCAAGTCGAATTGCAC---CATCATCTTCCTGAACCAGATCCGCCAGAAA 2140 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 | || | | | || |||| || ||| || | || || | ||| || |||| | Sbjct 2141 GTGGGGATCAT---CTTCGGCTCGCCTGAAGTGACTTCGGGCGGCACGGCACTCCGCTAC 2197 Query 68105 TACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCT 68164 ||||| || || ||| ||||| |||| | | ||| | |||||||| || || Sbjct 2198 TACGCGTCTGTCCGTCTGGATATCCGTCGCAAGGCCGCTATTAAGGAAGGTGACCAGATC 2257 Query 68165 GTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 68209 || |||||| ||| ||| ||||| | ||||||||| |||||| Sbjct 2258 GTGGGCAACGAGACGGTCGTTAAGGTGGCCAAGAACAAACTGGCG 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247413709059408