Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1233 134 9e-27 seq10994 132 3e-26 seq779 131 1e-25 seq5117 127 1e-24 seq1268 127 1e-24 seq6703 123 2e-23 seq10786 122 6e-23 seq3516 102 5e-17 seq42 102 5e-17 seq2466 84.2 1e-11 >seq1233 Length=22992 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 345 AGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 404 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 405 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 464 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || ||| | ||||| || | ||| || || | || || ||| Sbjct 465 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 524 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 525 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 556 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 4942 AGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 4883 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 4882 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 4823 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || || | ||||| || | ||| || || | || || ||| Sbjct 4822 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 4763 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 4762 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4731 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 117 AGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 176 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 177 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 236 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || || | ||||| || | ||| || || | || || ||| Sbjct 237 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 296 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 297 TTCCCCGTCAGAGTCTTCACGAAGATCTGCATG 329 >seq10994 Length=1377 Score = 132 bits (146), Expect = 3e-26 Identities = 149/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || ||||| ||||| |||||||||| Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | || |||||||| | ||||| || ||||| || Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 1292 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 1293 -TGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 1351 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 1352 ACAAAGATCTGCATGAT 1368 >seq779 Length=1215 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 30 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 89 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 90 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 149 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || ||| | ||||| || | ||| || || | || || ||| Sbjct 150 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 209 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 210 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 241 >seq5117 Length=12130 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 11689 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 11748 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 11749 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 11808 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || ||| | ||||| || | ||| || || | || || ||| Sbjct 11809 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 11868 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 11869 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 11901 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 11917 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 11976 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 11977 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 12036 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || ||| | ||||| || | ||| || || | || || ||| Sbjct 12037 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 12096 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 12097 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 12129 >seq1268 Length=19578 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 214 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 155 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 154 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 95 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || ||| | ||||| || | ||| || || | || || ||| Sbjct 94 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 35 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 34 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 2 >seq6703 Length=12229 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 11820 AGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 11879 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 11880 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 11939 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || || | ||||| || | ||| || || | || || ||| Sbjct 11940 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 11999 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 12000 TTCCCCGTCAGAGTCTTCACGAAGATCTGCATG 12032 Score = 98.7 bits (108), Expect = 6e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 12048 AGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 12107 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 12108 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 12167 Query 34886 TTTATTTTTTGTTTGAC 34902 | ||||| || || || Sbjct 12168 TGGATTTTCTGCTTCAC 12184 >seq10786 Length=3597 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 30 AGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 89 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 90 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 149 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || ||| | ||||| || | ||| || || | || || ||| Sbjct 150 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTC 209 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 210 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 241 >seq3516 Length=19581 Score = 102 bits (112), Expect = 5e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||| | |||||||||||||| ||||| |||||||| || |||| | || ||| Sbjct 16831 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCC 16772 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || ||||| |||||||||||||| || |||||||| |||| Sbjct 16771 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 16731 >seq42 Length=28877 Score = 102 bits (112), Expect = 5e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||| | |||||||||||||| ||||| |||||||| || |||| | || ||| Sbjct 26108 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCC 26049 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || ||||| |||||||||||||| || |||||||| |||| Sbjct 26048 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 26008 >seq2466 Length=31792 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34815 TGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCC 34874 |||| |||| ||||| ||||| ||||||||||| || || |||||||| | || | | Sbjct 25630 TGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATTC 25571 Query 34875 CCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAA 34934 |||||||||| | ||||| || |||||| | ||||| || || ||| || || | Sbjct 25570 CCTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCACGTCGA 25511 Query 34935 CGGTTATGGTCTTTCCCGTGAGGG 34958 || |||||||| || | |||| Sbjct 25510 GCGTGATGGTCTTGCCTGCAAGGG 25487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325645560396719