Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1233 107 5e-18 seq779 107 5e-18 seq10786 102 2e-16 seq5117 102 2e-16 seq1268 102 2e-16 seq6703 93.3 1e-13 >seq1233 Length=22992 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| |||| ||||| ||| ||| | |||| Sbjct 541 AAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAAC 482 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 481 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 422 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 421 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 362 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 361 ACGCTTCACCTGGT 348 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| |||| ||||| || ||| | |||| Sbjct 4746 AAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAT 4805 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 4806 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 4865 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 4866 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 4925 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 4926 ACGCTTCACCTGGT 4939 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 313 AAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAT 254 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 253 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 194 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 193 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 134 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 133 ACGCTTCACCTGGT 120 >seq779 Length=1215 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| |||| ||||| ||| ||| | |||| Sbjct 226 AAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAAC 167 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 166 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTGATCTTC 107 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 106 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 47 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 46 ACTCTCCACCTGGT 33 >seq10786 Length=3597 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| ||| ||| | |||| Sbjct 226 AAGACTCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAAC 167 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 166 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTC 107 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 106 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 47 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 46 ACTCTCCACCTGGT 33 >seq5117 Length=12130 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| ||| ||| | |||| Sbjct 11885 AAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAAC 11826 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 11825 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTC 11766 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 11765 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 11706 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 11705 ACTCTCCACCTGGT 11692 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| ||| ||| | |||| Sbjct 12113 AAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAAC 12054 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 12053 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTC 11994 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 11993 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 11934 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 11933 ACTCTCCACCTGGT 11920 >seq1268 Length=19578 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| ||| ||| | |||| Sbjct 18 AAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAAC 77 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 78 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTC 137 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 138 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 197 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 198 ACTCTCCACCTGGT 211 >seq6703 Length=12229 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 12016 AAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAT 11957 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 11956 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 11897 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 11896 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 11837 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 11836 ACGCTGCACCTGGT 11823 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206200 AAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATT 206259 || |||||||| |||| ||||| || ||| | |||| || ||||| || || Sbjct 12229 AAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAATGTGAAGCAGAAAATC 12170 Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319 ||||| || || || || ||| ||| || | || ||||||||||| |||||| || Sbjct 12169 CAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTG 12110 Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || | || || ||| |||||| ||||||| |||||||| |||||||| || Sbjct 12109 GAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACGCTTCACCTGGT 12051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181640594117821