Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq8319 279 6e-70 seq10380 239 5e-58 >seq8319 Length=37522 Score = 279 bits (308), Expect = 6e-70 Identities = 488/699 (70%), Gaps = 11/699 (2%) Strand=Plus/Plus Query 146878 AGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTG 146937 ||| ||||||| || || || ||| | ||||| | ||| |||||||||||||| Sbjct 9858 AGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTTC 9917 Query 146938 AGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACG 146997 || || ||||| ||||| || | | ||| | || || || |||| ||||| | ||| Sbjct 9918 AGATACACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCACT 9977 Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 |||||||| | |||||||||| ||| ||||| ||||||||||| || ||||| ||| Sbjct 9978 TGGGCCACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCCC 10037 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 || || |||| | |||||||| || ||||| ||||| ||||| |||||||| |||||| Sbjct 10038 ATATCGGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTGG 10097 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAG 147177 || | ||||||||||||||||||||||| || ||| ||||| |||||||| || || Sbjct 10098 CAGAACATGTGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGAA 10157 Query 147178 ACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTG 147236 | ||| | ||| | | | ||| || ||| | | || | || || ||| || Sbjct 10158 AGCACGATCCGACGGTCGCTC-GGATTCGTTCGTAGCTTCTGAATGACTTCGGCCAGTTG 10216 Query 147237 GTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGCC 147295 ||||||||| || || ||| | | | ||| |||| |||| |||| || || || | Sbjct 10217 GTCCACGCCTTGACCAGTGTAATCAG-CGTGCATGTCCGTGTACTTGGCTCCGAAATGGC 10275 Query 147296 TCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGC-C 147354 ||||||||||||||| || |||||||| ||||| | || | | || ||||||| | Sbjct 10276 GCCACTGGAAGCCGTAAACCGGCCCCAGATCGCC-CGTTTCCCGAGCTTGAAGCCCTCGA 10334 Query 147355 CGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCA-CTCCCTTGGCGGAGAG 147413 | | ||| |||| | || |||| | ||||||||||| | ||| | || | | Sbjct 10335 CTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAAC 10394 Query 147414 CTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCA 147473 | | | || |||| ||| | |||||||| | |||||||| || || | ||| Sbjct 10395 GTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCGCGCCA 10453 Query 147474 AAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAAT---ACCTCGCCTG 147530 || || | |||||| || ||||| || ||| |||| | || ||| | | | ||| Sbjct 10454 GAACACGCGCTTGGTCGTGAGCAGAGGAAACACATCCCCCCGCAAATTGAAGCGCATCTG 10513 Query 147531 GTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 | | ||||| || || | || || ||||| || | ||| Sbjct 10514 GGCGCCAAAGACGGATAAAGTTCCGGTGCCTGTGCGGTC 10552 >seq10380 Length=37184 Score = 239 bits (264), Expect = 5e-58 Identities = 484/703 (69%), Gaps = 19/703 (3%) Strand=Plus/Minus Query 146878 AGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTG 146937 ||| ||||||| || || || ||| | ||||| | || |||||||||||||| Sbjct 12525 AGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGTAGCGGCTCCACGTGGTTC 12466 Query 146938 AGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACG 146997 || || ||||| ||||| || | | ||| | ||| || || |||| ||||| | ||| Sbjct 12465 AGATACACGTGGGCGTCACCAATGACGTGGATAAACTCGCCGGGCTGCAGGCCAGCCACT 12406 Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 |||||||| | || ||||||| ||| || || ||||||||||| || ||||| ||| Sbjct 12405 TGGGCCACGAGTCTCGTAAGCAGCGCGTAACTAGCGATGTTGAAGGGTACGCCCAGCCCC 12346 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 || || |||| | ||| |||| || ||||| || || || || |||||||| ||||| Sbjct 12345 ATATCGGCCGAACGCTGATACATTTGACACGACAGTTCGCCATCCGCCACGTAGAACTGA 12286 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAG 147177 || | |||||||||||||| || ||||| || ||| ||||| |||||||| || || Sbjct 12285 CAAAACATGTGGCACGGCGGTAGTGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGAA 12226 Query 147178 ACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTCGATAAC-CCACCTCAGCT 147235 | ||| | || | | | ||| || ||| | | || | || || || | ||| | Sbjct 12225 AGCACGATGCGACGGTCGCTC-GGATTCGTTCGTAGCTTCTGAATGACTTCAGC-CAGTT 12168 Query 147236 GGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGC 147294 |||||||||| ||||| ||| | | | ||| || | |||| ||||||| || || Sbjct 12167 GGTCCACGCCTTGGCCAGTGTAATCAG-CGTGCATGTTCGTGTACTTGGCCCCGAAATGA 12109 Query 147295 CTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGC- 147353 | ||| ||||||||||| || |||||||| ||||| | || | | || ||||||| | Sbjct 12108 CGCCATTGGAAGCCGTAGACCGGCCCCAGATCGCC-CGTTTCCCGAGCTTGAAGCCCTCG 12050 Query 147354 CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCA-CTCCCTTGGCGGAGA 147412 | | ||| |||| | || |||| | ||||||||||| | ||| || || | | Sbjct 12049 ACTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTTTGCTGCAA 11990 Query 147413 GCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCC 147472 | | | || |||| ||| | |||||||| | |||||||| || || | || Sbjct 11989 CGTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCGCGCC 11931 Query 147473 AAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCCTCAGCGAAT---ACCTCG 147526 | || || | |||||| || ||||| || ||| | |||| || ||| | | | Sbjct 11930 AGAACACGCGCTTGGTCGTGAGCAGAGGAAACACATTATCCC---GCAAATTGAAGCGCA 11874 Query 147527 CCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 |||| | ||||| || || | || || |||||||| | ||| Sbjct 11873 TCTGGGCGCCAAAGACGGATAAAGTCCCGGTGCCCGTGCGGTC 11831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583401198866400