Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6703 141 8e-29 seq5117 136 4e-27 seq1233 136 4e-27 seq1268 131 2e-25 seq10786 122 8e-23 seq10994 116 3e-21 seq779 113 4e-20 seq3516 84.2 2e-11 seq42 84.2 2e-11 >seq6703 Length=12229 Score = 141 bits (156), Expect = 8e-29 Identities = 175/238 (74%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 35500 CTCTTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGT 35558 |||| || ||||| ||||| | | | ||||| || | |||| |||||| || |||| Sbjct 11794 CTCTCTAGTTTCCGCCACGAAGACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGT 11853 Query 35559 TGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCT 35618 |||| ||| || || || |||| ||||||||||| || || || |||| ||||||| Sbjct 11854 TGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCT 11913 Query 35619 GGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGC 35678 |||| | || | || ||||||||| ||| || ||||||| | | | | || ||| Sbjct 11914 GGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCG 11973 Query 35679 TCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| |||| ||||||||| || ||||||| ||| ||||| || |||||||| Sbjct 11974 ACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 12031 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | |||| |||||| || |||||||| ||| || || || |||| || Sbjct 12050 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 12109 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | || | || ||||||||| Sbjct 12110 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 12169 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || ||||||| | | | | || ||| || ||||| |||| ||||||||| || Sbjct 12170 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 12229 >seq5117 Length=12130 Score = 136 bits (150), Expect = 4e-27 Identities = 176/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 35500 CTCTTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGT 35558 ||||||| ||||| ||||| | | | ||||| || | ||| |||||| || |||| Sbjct 11663 CTCTTTAGTTTCCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGT 11722 Query 35559 TGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCT 35618 |||| ||| || || || |||| ||||||||||| || || || |||| ||||||| Sbjct 11723 TGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCT 11782 Query 35619 GGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCG 35677 |||| | || | || ||||||||| ||| || ||||||| |||| | | || ||| Sbjct 11783 GGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCC 11841 Query 35678 CTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| |||| ||||||||| || ||||||| ||| ||||| || |||||||| Sbjct 11842 GAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 11900 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| ||| || || || |||| || Sbjct 11919 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 11978 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | || | || ||||||||| Sbjct 11979 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 12038 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| || ||||||| |||| | | || ||| | ||||| |||| ||||||||| | Sbjct 12039 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 12097 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||||| ||| ||||| || |||||||| Sbjct 12098 TGCCCGTCAGAGTCTTCACGAAGATCTGCAT 12128 >seq1233 Length=22992 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | |||| |||||| || |||||||| ||| || || || |||| || Sbjct 119 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 178 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | || | || ||||||||| Sbjct 179 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 238 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || ||||||| | | | | || ||| || ||||| |||| ||||||||| || Sbjct 239 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 298 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||| ||||| || |||||||| Sbjct 299 CCCCGTCAGAGTCTTCACGAAGATCTGCAT 328 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 |||||||| || | | | ||||| || | |||| |||||| || |||||||| ||| Sbjct 4960 TTTCCACCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCG 4901 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 || || || |||| ||||||||||| || || || |||| ||||||||||| | Sbjct 4900 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 4841 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | || ||||||||| ||| || ||||||| | | | | || ||| || ||| Sbjct 4840 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCC 4781 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||||||| || || || | || ||||| || |||||||| Sbjct 4780 ACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4731 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | |||| |||||| || |||||||| ||| || || || |||| || Sbjct 347 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 406 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | || | || ||||||||| Sbjct 407 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 466 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| || ||||||| |||| | | || ||| | ||||| |||| ||||||||| | Sbjct 467 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 525 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || ||||| || |||||||| Sbjct 526 TGCCAGTGAGGGTCTTCACGAAGATCTGCAT 556 >seq1268 Length=19578 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||| ||||| | | | ||||| || | ||| |||||| || |||||||| ||| Sbjct 232 TTTCCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 173 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 || || || |||| ||||||||||| || || || |||| ||||||||||| | Sbjct 172 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGC 113 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTC 35685 || | || ||||||||| ||| || ||||||| |||| | | || ||| | || Sbjct 112 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTC 54 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| |||| ||||||||| || ||||||| ||| ||||| || |||||||| Sbjct 53 CACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 3 >seq10786 Length=3597 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| ||| || || || |||| || Sbjct 32 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 91 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | || | || ||||||||| Sbjct 92 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 151 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| || ||||||| |||| | | || ||| | ||||| |||| ||||||||| | Sbjct 152 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 210 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||| ||| ||||| || |||||||| Sbjct 211 TGCCAGTCAGAGTCTTCACGAAGATCTGCAT 241 >seq10994 Length=1377 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | || || || |||| ||||||||||| || || || | Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || ||||||||| ||| || ||||| | | ||| Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACA-TTG 1294 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | |||| || ||||| |||| |||||| || || ||||||| || |||||| Sbjct 1295 TCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACA 1354 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1355 AAGATCTGCAT 1365 >seq779 Length=1215 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| ||| || || || |||| || Sbjct 32 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 91 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | || | || ||||||||| Sbjct 92 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 151 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| || ||||||| |||| | | || ||| | ||||| |||| ||||||||| | Sbjct 152 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 210 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || ||||| || |||||||| Sbjct 211 TGCCAGTGAGGGTCTTCACGAAGATCTGCAT 241 >seq3516 Length=19581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||||| || | ||| |||||||| || |||||||| || | | Sbjct 16849 CCACCGCGCAGACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 16790 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| ||||||||||| | ||| Sbjct 16789 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGA 16730 Query 35630 A 35630 | Sbjct 16729 A 16729 >seq42 Length=28877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||||| || | ||| |||||||| || |||||||| || | | Sbjct 26126 CCACCGCGCAGACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 26067 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| ||||||||||| | ||| Sbjct 26066 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGA 26007 Query 35630 A 35630 | Sbjct 26006 A 26006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450726538817080