Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1363 104 3e-17 seq2060 100 4e-16 >seq1363 Length=31850 Score = 104 bits (114), Expect = 3e-17 Identities = 120/158 (76%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||| ||||| || || | ||| || || | ||| || | ||||| || | Sbjct 9931 ACATGAGGCAGGCAAAGTCGCAGTGCATGCCTTCGTCACGACTGATCAGCTCGTTGGAGA 9872 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCA 39727 | |||| |||||||| || || ||||| || ||||| || |||| |||||||| | || Sbjct 9871 AGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-AGCAAAAGGAGCCG 9813 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATG-CAACAA 39764 || |||||||||||||| || || || || | |||||| Sbjct 9812 GAGAAGAAGATGCCTTCCACGGCCGCGAAGGCCAACAA 9775 >seq2060 Length=42285 Score = 100 bits (110), Expect = 4e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||||||||| || || | ||| || || | ||| || | ||||| || | Sbjct 32383 ACATGAGGCAGGCGAAGTCGCAGTGCATGCCTTCGTCACGACTGATCAGCTCGTTGGAGA 32442 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | |||| |||||||| || || ||||| || ||||| || |||| |||| || || || Sbjct 32443 AGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-AGCAGAAGGAGCCC 32501 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGC 39759 || |||||||||||||| || || || || || Sbjct 32502 GAGAAGAAGATGCCTTCCACGGCCGCGAACGC 32533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686806613729640