Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq848 116 1e-20 seq4274 111 5e-19 seq1363 105 2e-17 seq2060 102 3e-16 >seq848 Length=74974 Score = 116 bits (128), Expect = 1e-20 Identities = 357/540 (66%), Gaps = 14/540 (3%) Strand=Plus/Minus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||||| || || ||| | |||||||||||| || ||| |||||||| || || || ||| Sbjct 17404 GGCATCATCCCCATGCTGCGTGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGC 17345 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG- 255090 ||||| ||| || | ||| ||||||||||||||||||||||||||||| || || Sbjct 17344 GGCAAGCGCAAGGGCTCCTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC-GTGTTCGA 17286 Query 255091 GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACAC 255150 ||| | ||| | | || ||||| |||| | ||| |||||| | | | Sbjct 17285 GTTCCTGGACCTGCGCAAGAACCACGGCAACGAGCTCCACCGCGCGCGCGACCTGTTCTA 17226 Query 255151 CGCTGTCT-GGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCC 255209 ||| | | ||||| |||||||| ||| ||||||||| ||| | ||||| | Sbjct 17225 CGCGTTGTGGGTGC-CTGATCTGTTCATGAAGCGCGTGGAAGCCAACGGCAAGTGGAGTC 17167 Query 255210 TCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAAC 255269 | | || |||||| | |||| | || | | | ||||| |||||||| || | Sbjct 17166 TGTTTTGCCCCAACGAAGCGCCGGACCTGTACAAGTGCTGGGGCGACGAGTTCGAGGCGC 17107 Query 255270 TGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATC 255328 |||| | |||||||||| | ||||| | || | | | | | |||| || || | Sbjct 17106 TGTACGAGAAGTACGAGCGCGAAGGCCGCGCCCGCAAGACCA-TCAACGCGCAGCAGCTG 17048 Query 255329 TGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGAC 255388 ||| | | || || | |||| | || || || | || ||| | || ||| ||| Sbjct 17047 TGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTTCCCTTCATGCTGTTCAAGGAC 16988 Query 255389 -CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCG---AACCT 255444 | || |||| ||| ||||| | ||| || || || | ||||| ||| | Sbjct 16987 GCGGCCAACCGCA-AGTCCAACCAGCAGAACCTGGGCACCAT---CCGCTCGAGCAACTT 16932 Query 255445 GTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTC 255504 |||| |||| | | | | ||||| | | | ||||||||||| |||||| ||||||| Sbjct 16931 GTGCTGCGAGGTCATGGAGTACACGGCGCCCGATGAGGTGGCCGTGTGCAACCTGGCGTC 16872 >seq4274 Length=4240 Score = 111 bits (122), Expect = 5e-19 Identities = 353/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||||| || || ||| | |||||||||||| || ||| |||||||| || || || ||| Sbjct 1120 GGCATCATCCCCATGCTGCGTGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGC 1061 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG- 255090 || || ||| || | ||| ||||||||||||||||||||||||||||| || || Sbjct 1060 GGTAAGCGCAAGGGCTCCTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC-GTGTTCGA 1002 Query 255091 GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACAC 255150 ||| || ||| | | || ||||| |||| | ||| |||||| | | | Sbjct 1001 GTTCTTGGACCTGCGCAAGAACCACGGCAACGAGCTCCACCGCGCGCGCGACCTGTTCTA 942 Query 255151 CGCTGTCT-GGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCC 255209 ||| | | ||||| ||||| || ||| ||||||||| ||| | ||||| Sbjct 941 CGCGTTGTGGGTGC-CTGATCTTTTCATGAAGCGCGTGGAAGCCAACGGCAAATGGAGTT 883 Query 255210 TCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAAC 255269 | | || || ||| | |||| | || | | | ||||| |||||||| || | Sbjct 882 TGTTCTGCCCTAACGAAGCGCCGGACCTGTACAAATGCTGGGGCGACGAGTTCGAGGCGC 823 Query 255270 TGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATC 255328 |||| | |||||||||| | ||||| | || | | | | | |||| || || | Sbjct 822 TGTACGAGAAGTACGAGCGCGAAGGCCGCGCCCGCAAGACCA-TCAACGCGCAGCAGCTG 764 Query 255329 TGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGAC 255388 ||| | | || || | |||| | || || || |||| ||| | || ||| ||| Sbjct 763 TGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTGCCCTTCATGCTGTTCAAGGAC 704 Query 255389 -CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTG 255447 | || |||| ||| ||||| | ||| || || || ||| | ||| |||| Sbjct 703 GCGGCCAACCGCA-AGTCCAACCAGCAGAACCTGGGCACCATCCGCTCCAGCAACTTGTG 645 Query 255448 CACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTC 255504 | |||| | | | | ||||| | | | ||||||||||| |||||| ||||||| Sbjct 644 CTGCGAGGTCATGGAGTACACGGCGCCCGACGAGGTGGCCGTGTGCAACCTGGCGTC 588 >seq1363 Length=31850 Score = 105 bits (116), Expect = 2e-17 Identities = 332/504 (66%), Gaps = 28/504 (6%) Strand=Plus/Plus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| |||| | | ||||| ||||| || | |||||||| ||||| Sbjct 9469 GAGCGCCACTTCATCAAGCACGTGTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTGAAC 9528 Query 443466 GAGAATCTGGTGACGCGTTTCTAC---GAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 ||||| ||| | | ||| | ||| || ||| ||||||| |||| |||| Sbjct 9529 GAGAACTTGGCCATGAACTTCAGCAGCGAAGTGCAGGTGC---CCGAGGCGCGCTGCTTC 9585 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| ||||| ||| || |||||||| ||| | ||||||||| | | | ||| | Sbjct 9586 TACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATC--G 9643 Query 443583 ACAC-TA-ATTCCGAACGAAGACGAACAGCGGTCCATCTTCTCATCGT--TCATGACCAC 443638 |||| || ||| | ||| | || || | ||||| || || || ||||| Sbjct 9644 ACACGTACATTAAGGACGCGGTGGAGAAG--GATCATCTGCTGCGCGCCATCGAGACCAT 9701 Query 443639 GCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAA-CGAGAAAATCTCA 443697 || || | || | ||| | | ||||| ||||| ||| || | ||| Sbjct 9702 CCCGTGCGTGACCAAGAAGGCCAGTTGGGCGCTCAAGTGGTGCGACTCGCG-----CTCG 9756 Query 443698 GCTTCGTC----GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGC 443753 || |||| ||||| | | || || || | || ||||| | || || |||| Sbjct 9757 GCCTCGTATGCTGAGCGTTTGTTGGCCTTCGCGGCCGTGGAAGGCATCTTCTTCTCCGGC 9816 Query 443754 AGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAG 443813 |||| || |||||||||||| |||| ||||| || || |||| || || | ||| Sbjct 9817 TCCTTTTGC-TCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTC 9875 Query 443814 TAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACAC 443873 ||||| ||||||||||| ||||| || |||| |||||||| ||||| || | ||| | Sbjct 9876 CAACGAGCTGATCAGTCGTGACGAAGGCATGCACTGCGACTTTGCCTGCCTCATGTACTC 9935 Query 443874 CAAACACATCGTGCACAAGCTGCC 443897 |||| ||||| |||||||||| Sbjct 9936 GAAAC---TCGTGAACAAGCTGCC 9956 >seq2060 Length=42285 Score = 102 bits (112), Expect = 3e-16 Identities = 104/135 (77%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| |||| ||||| || || |||| || || | ||| ||||| || Sbjct 32489 CTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCT 32430 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 ||||||||| ||||| || |||| |||||||||||||| || | ||| | || | | Sbjct 32429 GATCAGTCGTGACGAAGGCATGCACTGCGACTTCGCCTGCCTCATGTACTCGAAGC---T 32373 Query 443883 CGTGCACAAGCTGCC 443897 |||| |||||||||| Sbjct 32372 CGTGAACAAGCTGCC 32358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588093808044945