Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1363 129 7e-25 seq2060 122 1e-22 seq6130 84.2 3e-11 >seq1363 Length=31850 Score = 129 bits (142), Expect = 7e-25 Identities = 199/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| |||||||| | | |||||| | || || | |||||| | Sbjct 9637 CTCATCGACACGTACATTAAGGACGCGGTGGAGAAGGATCATCTGCTGCGCGCCATCGAG 9696 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | ||||| | ||||| || |||||| | ||||||| || | ||| Sbjct 9697 ACCATCCCGTGCGTGACCAAGAAGGCCAGTTGGGCGCTCAAGTGGTGCGACTCGCGCTCG 9756 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 || | ||||||||| | || || || ||| || || || ||||||||||| || Sbjct 9757 GCCTCGTATGCTGAGCGTTTGTTGGCCTTCGCGGCCGTGGAAGGCATCTTCTTCTCCGGC 9816 Query 94852 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 ||||| ||| | || | ||||| |||||||| || |||||||| || ||| |||||||| Sbjct 9817 TCCTTTTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCC 9876 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| ||| ||||||||| || | ||| || ||||| Sbjct 9877 AACGAGCTGATCAGTCGTGACGAAGGCATGCACTGCGACTTTGC 9920 >seq2060 Length=42285 Score = 122 bits (134), Expect = 1e-22 Identities = 189/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 94729 ||||| |||| ||| |||||||| |||| |||||| | || || | |||||| Sbjct 32677 CTCATCGACACGTACATTAAGGACACGGTG--GAGAAGGACCATCTGCTGCGCGCCATCG 32620 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 94789 | || | ||||| | ||||| || |||||| | ||||||| || | | Sbjct 32619 AGACCATCCCGTGCGTGACCAAGAAGGCCAGTTGGGCGCTCAAGTGGTGCGACTCGCGCT 32560 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 || || | ||| ||||| | | || || ||| || || || ||||||||||| | Sbjct 32559 CGGCCTCGTATGCGGAGCGTTTGCTGGCGTTCGCGGCCGTGGAAGGCATCTTCTTCTCGG 32500 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||||||||| | || | ||||| |||||||| || |||||||| || ||| |||||| Sbjct 32499 GCTCCTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCT 32440 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||| ||| ||||||||| || Sbjct 32439 CCAACGAGCTGATCAGTCGTGACGAAGG 32412 >seq6130 Length=61013 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/363 (67%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || || ||||| ||||| | |||||||| || | ||| |||| | || | |||| | Sbjct 56498 CCTGTGCCGATGCCCTCAGCTCCGTTCACAAGCAGCATCGGGATGATCGGTACGTAGTGG 56439 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC-TCT-CG 168395 ||||||| | |||| ||||||||||| ||| || | || || || ||| || Sbjct 56438 ACTGGCTCCACGGGGAAGCCATCGTCATCGGCGTAGGCCAGCAATGCGTCGTCGTCTTCG 56379 Query 168396 GATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGAC 168454 | | || | || | | ||| || | | || |||||||| | || | Sbjct 56378 GGGAACAG--CAAACGCGTGTGCTTCTGCAA-CAGCGTGAAGATATAACGCGGACTGGCA 56322 Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 || ||||| || ||| || ||||| || |||||||| |||| | || || | Sbjct 56321 GCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACTGACCCGACGGATAGAGCAGCGGCAGG 56262 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTC 168573 ||||| || |||| | |||| | ||||| ||||| ||||| | || || ||||| || Sbjct 56261 TTGTTGGAGCCCACGAAGTCCTGCGCCATGTTGACGATCGTCGAGTGC-AGCGAGACCTC 56203 Query 168574 ACCGTGGTGGTACGCACTCT--TCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATC 168631 |||||| ||||| || | | || |||| | || |||||||||||||||| |||| | Sbjct 56202 ACCGTGATGGTAAGCCGTGTGTTCGCTGCAATAAC--CCGCCAACTGCGCCACCTTCACC 56145 Query 168632 TCA 168634 ||| Sbjct 56144 TCA 56142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583174032665240