Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8319 237 1e-57 >seq8319 Length=37522 Score = 237 bits (262), Expect = 1e-57 Identities = 439/636 (69%), Gaps = 16/636 (3%) Strand=Plus/Plus Query 29833 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATC 29892 ||| ||||| || || | ||| || | |||||| || |||||| ||||||| | Sbjct 9857 CAGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTT 9916 Query 29893 CAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29952 ||| || ||||| ||||| || | | ||||| |||||||| || | || || | || Sbjct 9917 CAGATACACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCAC 9976 Query 29953 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 30012 || |||| | |||||| || | ||| ||||||||||| |||||||| || ||||| Sbjct 9977 TTGGGCCACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCC 10036 Query 30013 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 30072 ||| || |||| | |||||| | |||||||| ||||| ||||| |||||| ||||| Sbjct 10037 CATATCGGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTG 10096 Query 30073 ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30132 || | ||||||||| || || ||||| | || || |||||||| ||| | Sbjct 10097 GCAGAACATGTGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGA 10156 Query 30133 CACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTGATG-AGGTCCACGGCGTTTTG 30186 | | ||| || | ||| || | | |||| || || | | | |||| Sbjct 10157 AAGCACGATCCGACGGTCGCTCGGATTCGTTCGTAGCTTCTGAATGACTTCGGC------ 10210 Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30246 ||| || ||||| || || | ||| || || |||||||||||||| |||||||| Sbjct 10211 CAGTTGGTCCACGCCTTGACCAGTGTAATCAGCGTGCATGTCCGTGTACTTGGCTCCGAA 10270 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30306 ||| | ||||||||| ||||| ||||| ||||| || ||| ||||| | ||| |||||| Sbjct 10271 ATGGCGCCACTGGAAGCCGTAAACCGGCCCCAGATCGCCCGTTTCCC-GAGCTTGAAGCC 10329 Query 30307 C-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT-CA 30364 | | |||||| | | || | || |||||| |||||||||| | | |||||| | Sbjct 10330 CTCGACTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTCTGCT 10389 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424 | | | | | ||| ||| || || | |||||||| |||||||| | ||| | Sbjct 10390 GCAACGTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCG 10448 Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 ||| || || | |||||||||||| || |||||| Sbjct 10449 CGCCAGAACACGCGCTTGGTCGTGAGCAGAGGAAAC 10484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406251467342892