Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq9306 149 3e-31 seq10490 140 2e-28 >seq9306 Length=2507 Score = 149 bits (164), Expect = 3e-31 Identities = 388/590 (66%), Gaps = 9/590 (2%) Strand=Plus/Plus Query 65814 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65873 ||||| ||||| |||||||| || || ||| || ||| | || ||| || | Sbjct 1702 CGGGTTGTGGAGATCTACGGGCCGGAGAGTTCGGGCAAGACCACGCTGGCGCTGAGCTGC 1761 Query 65874 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65933 ||||| | ||||||||| | ||| ||||| ||||||||| ||||| || | Sbjct 1762 GTGGCTGAGGCGCAGAAGTTGGACGGCGTGTGCGCCTTCATCGACGCCGAGCATGCCATC 1821 Query 65934 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65993 || | | ||||||||||| || || |||||| | ||| || || |||||| Sbjct 1822 GATGCGCACTACGCCAAGGCTCTGGGCGTGGACATTGACGCGCTGTACGTCTCCCAGCCG 1881 Query 65994 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66053 ||| | ||||| |||| ||||| |||| || ||| || || |||| | || | Sbjct 1882 GACTCAGGCGAAGAGGCGCTGGAAATCGCCGATACGCTCATCCGCTCAGGCGCGGTGGAC 1941 Query 66054 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 66113 |||| || | ||| ||||| || || ||||| || |||||||| || ||||| || Sbjct 1942 CTCGTGGTGCTGGACAGCGTGGCAGCTCTCGTGCCTCGTGCCGAGCTGGAGGGCGAGATG 2001 Query 66114 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACC 66173 || ||| || ||| ||||| || || || ||| || || ||||||| ||||| Sbjct 2002 GGCGACCAGCAGATCGCACTGCAGGCTCGGCTTATGAGCCAAGCTCTGCGCAAACTCACA 2061 Query 66174 GGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAG 66230 ||| | | |||| | || ||| | | ||| | |||||| | ||| |||| Sbjct 2062 GGCTCGCTGTCCAAGTCGAATTGCACCATCA---TCTTCCTGAACCAGATCCGCCAGAAA 2118 Query 66231 ATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTC 66290 | || | | | || |||| || || || ||||||||| ||| | | | | Sbjct 2119 GTGGGGATCAT---CTTCGGCTCGCCTGAAGTGACTTCGGGCGGCACGGCACTCCGCTAC 2175 Query 66291 TACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCT 66350 ||||| || ||||| ||||| ||||||||| ||| | |||||||| || || Sbjct 2176 TACGCATCTGTCCGTCTGGATATCCGTCGCAAGGCCGCTATTAAGGAAGGTGACCAGATC 2235 Query 66351 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66400 || |||||| || || ||||| | ||||||||| ||||| |||| Sbjct 2236 GTGGGCAACGAGACGGTCGTCAAGGTGGCCAAGAACAAACTGGCGTCGCC 2285 >seq10490 Length=9071 Score = 140 bits (154), Expect = 2e-28 Identities = 386/590 (65%), Gaps = 9/590 (2%) Strand=Plus/Plus Query 65814 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65873 ||||| ||||| |||||||| ||||| ||| || ||| | || ||| || | Sbjct 1724 CGGGTTGTGGAGATCTACGGGCCAGAGAGTTCGGGCAAGACCACACTGGCGCTGAGCTGC 1783 Query 65874 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65933 ||||| | ||||||||| | ||| ||||| ||||||||| ||||| || | Sbjct 1784 GTGGCTGAGGCGCAGAAGCTGGACGGCGTGTGCGCCTTCATCGACGCCGAGCATGCCATC 1843 Query 65934 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65993 || | | ||||||||||| || || |||||| | ||| || || |||||| Sbjct 1844 GATGCGCACTACGCCAAGGCACTGGGCGTGGACATTGACGCGCTGTACGTCTCGCAGCCG 1903 Query 65994 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66053 ||| | ||||| |||| ||||| |||| || ||| || || || | || | Sbjct 1904 GACTCAGGCGAAGAGGCACTGGAAATCGCCGATACGCTCATCCGCTCAGGTGCTGTGGAC 1963 Query 66054 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 66113 |||| || | ||| ||||| || || ||||| || |||||||| || ||||| || Sbjct 1964 CTCGTGGTGTTGGACAGCGTGGCAGCTCTCGTGCCTCGTGCCGAGCTGGAGGGCGAGATG 2023 Query 66114 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACC 66173 || ||| || ||| ||||| || || || ||| || || |||| || ||||| Sbjct 2024 GGCGACCAGCAGATCGCACTGCAGGCTCGGCTTATGAGCCAAGCTCTGCGTAAACTCACA 2083 Query 66174 GGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAG 66230 ||| | | |||| | || ||| | | ||| | |||||| | ||| |||| Sbjct 2084 GGCTCGCTGTCCAAGTCGAATTGCACCATCA---TCTTCCTGAACCAGATCCGCCAGAAA 2140 Query 66231 ATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTC 66290 | || | | | || |||| || || || ||||||||| ||| | | | | Sbjct 2141 GTGGGGATCAT---CTTCGGCTCGCCTGAAGTGACTTCGGGCGGCACGGCACTCCGCTAC 2197 Query 66291 TACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCT 66350 ||||| || ||||| ||||| ||||||||| ||| | |||||||| || || Sbjct 2198 TACGCGTCTGTCCGTCTGGATATCCGTCGCAAGGCCGCTATTAAGGAAGGTGACCAGATC 2257 Query 66351 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66400 || |||||| || || ||||| | ||||||||| ||||| |||| Sbjct 2258 GTGGGCAACGAGACGGTCGTTAAGGTGGCCAAGAACAAACTGGCGTCGCC 2307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242387238221777