Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10380 185 8e-42 >seq10380 Length=37184 Score = 185 bits (204), Expect = 8e-42 Identities = 387/571 (68%), Gaps = 17/571 (3%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || ||||| || || || ||||| | ||||| || ||| | ||| || | ||| | Sbjct 11828 GGCGACCGCACGGGCACCGGGACTTTATCCGTCTTTGGCGCCCAGATGCGCTTCAATTTG 11887 Query 34211 CGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 |||| | ||||| ||||| ||||| || || |||| |||| ||||||| ||| Sbjct 11888 CGGGATAATGTGTTTCCTCTGCTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCTGAG 11947 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGG---G 34324 ||||| |||||||| | || || | ||||||| | ||| | ||| | | | Sbjct 11948 GAGCTCTTGTGGTTCATTAGCGGCGACACGAACGC-----AGC-CACGTTGCAGCAAAAG 12001 Query 34325 GTGA---AGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 | | | |||||||||| |||| || || || | |||||||| || ||| | | | Sbjct 12002 GACATCCACATCTGGGACGGCAACGGATCGCGTGAGTATCTGGACAGTCGAGGGCTTCAA 12061 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 ||||||| |||||| |||| ||||||||||| ||||| ||| | || || ||||| Sbjct 12062 GCTCGGGAAACGGGCGATCTGGGGCCGGTCTACGGCTTCCAATGGCGTCATTTCGGGGCC 12121 Query 34442 GAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTG 34501 |||| | | | || || || | || || || | |||||| ||| | || Sbjct 12122 AAGTACACGAACATGCACGCTGATTACACTGGCCAAGGCGTGGACCAACTGGCTGAAGTC 12181 Query 34502 ATCGACAC-CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 || | | || | || | || | ||| | | |||||| | | ||| |||||||| Sbjct 12182 ATTCAGAAGCTACGAACGAATCCGAGC-GACCGTCGCATCGTGCTTTCCGCTTGGAACCC 12240 Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGC 34620 | |||||| |||||| || || |||||||||| | || || |||||||| || Sbjct 12241 GGCGGATCTGAACGAGATGGCACTACCGCCGTGCCACATGTTTTGTCAGTTCTACGTGGC 12300 Query 34621 GAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCC 34680 | |||| || ||||| || || | ||||| || |||| || |||||| | || || || Sbjct 12301 GGATGGCGAACTGTCGTGTCAAATGTATCAGCGTTCGGCCGATATGGGGCTGGGCGTACC 12360 Query 34681 GTTCAACATTGCTAGTTACGCTCTGCTCACG 34711 |||||||| ||||||||||| ||||| ||| Sbjct 12361 CTTCAACATCGCTAGTTACGCGCTGCTTACG 12391 Score = 185 bits (204), Expect = 8e-42 Identities = 387/571 (68%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 ||| ||||| ||||||||||| |||||||| || || || | |||||| || |||| || Sbjct 12391 CGTAAGCAGCGCGTAACTAGCGATGTTGAAGGGTACGCCCAGCCCCATATCGGCCGAACG 12332 Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753 ||||| | || || ||||| || |||| ||| |||||||| || || | ||||||| Sbjct 12331 CTGATACATTTGACACGACAGTTCGCCATCCGCCACGTAGAACTGACAAAACATGTGGCA 12272 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813 ||| || || |||||| |||||| ||||||||| ||| | | |||||| | | Sbjct 12271 CGGCGGTAGTGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGAAAGCACGATGCGACG 12212 Query 6814 GTCATCAGGGTTCCGCTTCAAG-GTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTC 6872 ||| | || | || | || | | || || | ||| |||||| | || || | Sbjct 12211 GTC-GCTCGGATTCGTTCGTAGCTTCTGAATGACTTCAGCCAGTTGGTCCACGCCTTGGC 12153 Query 6873 CCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGT 6932 | | || || || | | | |||| ||||| || || | ||| ||||| |||| Sbjct 12152 CAGTGTAATCAGCGTGCATGTTCGTGTACTTGGCCCCGAAATGACGCCATTGGAAGCCGT 12093 Query 6933 AGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTC 6992 ||||||| |||| |||||| ||||||| | | | ||| || |||||||| | || | Sbjct 12092 AGACCGGCCCCAGATCGCCCGTTTCCCGAGCTTGAAGCCCTCGACTGTCCAGATACTCAC 12033 Query 6993 GAGACCCGTGAGCGTCCCAGATCT---TCACC---CCCCGGGACGAGAGCTCCTTGGTGT 7046 | || |||| |||||||||| | | || | | ||| | ||| | || Sbjct 12032 GCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTTTGCTGCAACGTG-GCT-----GCGT 11979 Query 7047 TCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTT 7106 ||||| | || || | |||||||| |||||||| ||||||| |||| |||| || | Sbjct 11978 TCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCGCGCCAGAACACGCGCT 11919 Query 7107 TCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACA 7163 | ||||| ||||| ||||| | |||| | ||| | || ||| | ||| || | Sbjct 11918 TGGTCGTGAGCAGAGGAAACACATTATCCCGCAAATTGAAGCGCATCTGGGCGCCAAAGA 11859 Query 7164 CGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 |||| | ||||| || || || ||||| || Sbjct 11858 CGGATAAAGTCCCGGTGCCCGTGCGGTCGCC 11828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448195715364720