Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8319 143 2e-29 >seq8319 Length=37522 Score = 143 bits (158), Expect = 2e-29 Identities = 416/639 (65%), Gaps = 22/639 (3%) Strand=Plus/Plus Query 29605 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTC 29664 ||| ||||| || || | ||| || | |||||| | |||||| |||||||||| Sbjct 9857 CAGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTT 9916 Query 29665 AAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29724 || || ||||| || || || | | ||||| |||||||| || | || || | || Sbjct 9917 CAGATACACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCAC 9976 Query 29725 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCC 29784 || |||| | |||||| || | ||| ||||||||||| ||||| || || ||||| Sbjct 9977 TTGGGCCACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCC 10036 Query 29785 CATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29844 ||| || | || | |||||| | || ||||| ||||| ||||| |||||| ||||| Sbjct 10037 CATATCGGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTG 10096 Query 29845 AC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGC 29901 | ||||| |||||||| || || ||||| || || |||||||| || Sbjct 10097 GCAGAACATG---TGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGC 10153 Query 29902 ACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTGATG-AGGTCCACGGCGTT 29955 | | | ||| || | ||| || | | |||| || || | | | |||| Sbjct 10154 GGAAAGCACGATCCGACGGTCGCTCGGATTCGTTCGTAGCTTCTGAATGACTTCGGC--- 10210 Query 29956 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNC 30015 ||| || ||||| || || | ||| || | | Sbjct 10211 ---CAGTTGGTCCACGCCTTGACCAGTGTAATCAGCGTGCATGTCCGTGTACTTGGCTCC 10267 Query 30016 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075 |||||| | ||||||||| ||||| ||||| ||||| || ||| ||||| | ||| ||| Sbjct 10268 GAAATGGCGCCACTGGAAGCCGTAAACCGGCCCCAGATCGCCCGTTTCCC-GAGCTTGAA 10326 Query 30076 GCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 |||| | |||||| | | || | || |||||| |||||||||| | | |||||| Sbjct 10327 GCCCTCGACTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTCT 10386 Query 30135 -CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 30193 | | | | | | ||| ||| || || | |||||||| |||||||| | ||| Sbjct 10387 GCTGCAACGTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACG 10445 Query 30194 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30232 | ||| || || | |||||||||||| || |||||| Sbjct 10446 CCGCGCCAGAACACGCGCTTGGTCGTGAGCAGAGGAAAC 10484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406104288693286