Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq8319 224 7e-54 >seq8319 Length=37522 Score = 224 bits (248), Expect = 7e-54 Identities = 436/636 (69%), Gaps = 16/636 (3%) Strand=Plus/Plus Query 27099 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 27158 ||| ||||| || || | ||| || | |||||| || |||||| |||||||| | Sbjct 9857 CAGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTT 9916 Query 27159 CAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 27218 ||| || ||||| ||||| || | | ||||| |||||||| || | || || | || Sbjct 9917 CAGATACACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCAC 9976 Query 27219 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 27278 || |||| | |||||| || | ||| ||||||||||| |||||||| || ||||| Sbjct 9977 TTGGGCCACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCC 10036 Query 27279 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTG 27338 ||| || |||| | |||||| | |||||||| ||||| || || ||||| ||||| Sbjct 10037 CATATCGGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTG 10096 Query 27339 ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 27398 || | ||||||||| || || ||||| | || || |||||||| ||| | Sbjct 10097 GCAGAACATGTGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGA 10156 Query 27399 CACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTGATG-AGGTCCACGGCGTTTTG 27452 | | ||| || | ||| || | | |||| || || | | | |||| Sbjct 10157 AAGCACGATCCGACGGTCGCTCGGATTCGTTCGTAGCTTCTGAATGACTTCGGC------ 10210 Query 27453 CAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAA 27512 ||| || ||||| || || | ||| || | |||||||||||||| |||||||| Sbjct 10211 CAGTTGGTCCACGCCTTGACCAGTGTAATCAGCGTGCATGTCCGTGTACTTGGCTCCGAA 10270 Query 27513 ATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 27572 ||| | ||| ||||| ||||| ||||| ||||| || ||| ||||| | ||| |||||| Sbjct 10271 ATGGCGCCACTGGAAGCCGTAAACCGGCCCCAGATCGCCCGTTTCCC-GAGCTTGAAGCC 10329 Query 27573 C-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT-CG 27630 | | |||||| | | || | || |||||| |||||||||| | | |||||| | Sbjct 10330 CTCGACTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTCTGCT 10389 Query 27631 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 27690 | | | | | ||| ||| || || | |||||||| |||||||| | ||| | Sbjct 10390 GCAACGTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCG 10448 Query 27691 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 ||| || || | |||||||||||| || |||||| Sbjct 10449 CGCCAGAACACGCGCTTGGTCGTGAGCAGAGGAAAC 10484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369453605405531