Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq1701 113 2e-20 seq4218 107 7e-19 >seq1701 Length=53897 Score = 113 bits (124), Expect = 2e-20 Identities = 205/290 (71%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTT-AATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCG 31063 ||||||||||||| || | ||| |||||||| | ||||||| || || | | | Sbjct 49495 CCATGCACATGTG-CGTGGCTTCGATGACCACGGCCACGCCCTGGGGCTCGATGACGCCC 49553 Query 31064 AACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATAC 31123 | | |||| |||||||| | || || || |||||||| ||||| || || || || Sbjct 49554 ATGATGGCGTTGGCGATCTGCTTCGTCAGGCGCTCCTGCACCTGCAGTCGCCGCGCGAAC 49613 Query 31124 ATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTG 31183 | || | || || | ||||||||| || |||| | |||||||| ||||||| | Sbjct 49614 ACCTCGGACACCCGCGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCCG 49673 Query 31184 ATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGA 31241 || ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | || Sbjct 49674 AT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCGA 49731 Query 31242 TGTCGCGCACCGTCACCATCTGGTCATG--CTTCTCCGCAC-CGTCTTCG 31288 |||| ||||| ||||||| ||| || ||||| || || || ||||| Sbjct 49732 TGTCCCGCACGACGACCATCTCGTCGTGGTCTTCTTCGAACACGGCTTCG 49781 >seq4218 Length=55731 Score = 107 bits (118), Expect = 7e-19 Identities = 204/290 (70%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 31005 CCATGCACATGTGTCGCGCCTT-AATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCG 31063 ||||||||||||| || | ||| |||||||| | || |||| || || | | | Sbjct 6415 CCATGCACATGTG-CGTGGCTTCGATGACCACGGCCACTCCCTGGGGCTCGATGACGCCC 6357 Query 31064 AACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATAC 31123 | | |||| |||||||| | || || || |||||||| ||||| || || || || Sbjct 6356 ATGATGGCGTTGGCGATCTGCTTCGTCAGGCGCTCCTGCACCTGCAGTCGCCGCGCGAAC 6297 Query 31124 ATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTG 31183 | || | || || | ||||||||| || |||| | |||||||| ||||||| | Sbjct 6296 ACCTCGGACACCCGCGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCCG 6237 Query 31184 ATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGA 31241 || ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | || Sbjct 6236 AT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCGA 6179 Query 31242 TGTCGCGCACCGTCACCATCTGGTCATG--CTTCTCCGCAC-CGTCTTCG 31288 |||| ||||| ||||||| ||| || ||||| || || || ||||| Sbjct 6178 TGTCCCGCACGACGACCATCTCGTCGTGGTCTTCTTCGAACACGGCTTCG 6129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187263131414336