Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq8319 84.2 1e-11 >seq8319 Length=37522 Score = 84.2 bits (92), Expect = 1e-11 Identities = 209/315 (66%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 1160 CGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCG 1219 || |||| |||| | ||||| |||||| | || || | ||| ||||| || | ||| Sbjct 10171 CGTCGGATCGTGCTTTCCGCTTGGAACCCGGCGGATCTGAACGAGATGGCGCTGCCGCCG 10112 Query 1220 TGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACCAG 1279 |||||||| | | |||| | ||||| | |||||| ||| ||| || | |||||| Sbjct 10111 TGCCACATGTTCTGCCAGTTCTACGTGGCGGACGGCGAGCTGTCGTGTCAAATGTACCAG 10052 Query 1280 CGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCG 1339 || || || ||| || || || || ||||| |||||| |||||||| ||| || Sbjct 10051 CGTTCGGCCGATATGGGGCTGGGCGTACCCTTCAACATCGCCAGTTACGCGCTGCTCACG 9992 Query 1340 CACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGAC 1399 | | || || ||| ||||||| | || ||| | ||| | |||||| Sbjct 9991 AGACTCGTGGCCCAAGTGGCTGGCCTGCAGCCCGGAGAGTTCATCCACGTCATTGGCGAC 9932 Query 1400 TGCCACATCTACAACAACCACGTCGACCAGGCGCTGATGCAGCTC-CGCCGACGACCGCG 1458 |||| | || |||||||| || | | || | ||||||| ||| |||| || || Sbjct 9931 GCCCACGTGTATCTGAACCACGTGGAGCCGCTGCAGCAGCAGCTCACGCGGACG-CCACG 9873 Query 1459 GCCCTACCCGAGGCT 1473 ||| | ||| | ||| Sbjct 9872 GCCGTTCCCCACGCT 9858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296088248112801