Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1233 154 1e-32 seq6703 147 2e-30 seq779 141 7e-29 seq10994 140 2e-28 seq5117 140 2e-28 seq1268 138 8e-28 seq10786 132 3e-26 seq3516 109 4e-19 seq42 109 4e-19 >seq1233 Length=22992 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||||||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 347 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 406 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | || ||||| || Sbjct 407 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 466 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| |||| ||| |||||||| Sbjct 467 GATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTT 526 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||| ||||| Sbjct 527 GCCAGTGAGGGTCTTCACGAAGATCTGCAT 556 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||||||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 4940 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 4881 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | || ||||| || Sbjct 4880 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 4821 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| |||| ||| |||||||| Sbjct 4820 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 4761 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||| ||||| Sbjct 4760 GCCAGTGAGGGTCTTCACGAAGATCTGCAT 4731 Score = 150 bits (166), Expect = 1e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||||||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 119 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 178 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | || ||||| || Sbjct 179 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 238 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| |||| ||| |||||||| Sbjct 239 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 298 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||||||||| |||||| Sbjct 299 CCCCGTCAGAGTCTTCACGAAGATCTGCATG 329 >seq6703 Length=12229 Score = 147 bits (162), Expect = 2e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 11822 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 11881 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | || ||||| || Sbjct 11882 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 11941 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| |||| ||| |||||||| Sbjct 11942 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 12001 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||||||||| |||||| Sbjct 12002 CCCCGTCAGAGTCTTCACGAAGATCTGCATG 12032 Score = 113 bits (124), Expect = 3e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||||||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 12050 CACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 12109 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | || ||||| || Sbjct 12110 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 12169 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| |||| ||| |||||||| Sbjct 12170 GATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 12229 >seq779 Length=1215 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| || || |||||| ||||||||||| || Sbjct 11 CATGCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 70 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||||| |||||||| || | Sbjct 71 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 130 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || || |||||||||| | | || | ||| | | || Sbjct 131 CGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTC 190 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||| |||||||| || |||||||||||||||||||| ||||| Sbjct 191 CACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 241 >seq10994 Length=1377 Score = 140 bits (154), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | || ||| |||| ||||||||||| ||||| |||| Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | |||||||| ||| || |||||||| || ||| Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 1295 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||| | | ||||| |||| ||| || ||||| ||||| ||||||||||| Sbjct 1296 --CAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 1353 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 1354 AAAGATCTGCATGAT 1368 >seq5117 Length=12130 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| || || |||||| ||||||||||| || Sbjct 11898 CATGCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 11957 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||||| |||||||| || | Sbjct 11958 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGG 12017 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || || |||||||||| | | || | ||| | | || Sbjct 12018 CGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTC 12077 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| ||| |||||||| ||||| || |||||||||||||| |||||| Sbjct 12078 CACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 12129 Score = 138 bits (152), Expect = 8e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| ||||||||||| ||| || ||| |||| || Sbjct 11691 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 11750 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||| || | || | || ||||| || Sbjct 11751 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 11810 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| |||| ||| |||||||| Sbjct 11811 GATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTT 11870 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||||||||| |||||| Sbjct 11871 GCCCGTCAGAGTCTTCACGAAGATCTGCATG 11901 >seq1268 Length=19578 Score = 138 bits (152), Expect = 8e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| ||||||||||| ||| || ||| |||| || Sbjct 212 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 153 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||| || | || | || ||||| || Sbjct 152 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 93 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| |||| ||| |||||||| Sbjct 92 GATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTT 33 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||||||||| |||||| Sbjct 32 GCCCGTCAGAGTCTTCACGAAGATCTGCATG 2 >seq10786 Length=3597 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| || || |||||| ||||||||||| || Sbjct 11 CATGCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 70 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||||| |||||||| || | Sbjct 71 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGG 130 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || || |||||||||| | | || | ||| | | || Sbjct 131 CGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTC 190 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||| |||||||| || || || |||||||||||||| ||||| Sbjct 191 CACGTCCAGCGTGATCGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 241 >seq3516 Length=19581 Score = 109 bits (120), Expect = 4e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||||||| |||||||||||||| ||||||||||| || | Sbjct 16849 CCACCGCGCAGACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 16790 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| ||||| ||||||| ||||||||| || Sbjct 16789 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 16737 >seq42 Length=28877 Score = 109 bits (120), Expect = 4e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||||||| |||||||||||||| ||||||||||| || | Sbjct 26126 CCACCGCGCAGACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 26067 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| ||||| ||||||| ||||||||| || Sbjct 26066 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 26014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359938185754917