Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10786 123 6e-23 seq6703 123 6e-23 seq5117 123 6e-23 seq1268 123 6e-23 seq1233 123 6e-23 seq779 123 6e-23 seq2466 122 2e-22 seq10994 113 1e-19 seq6148 113 1e-19 >seq10786 Length=3597 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 238 CAGATCTTCGTGAAGACTCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 179 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 178 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 119 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 118 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 59 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 58 CAGAAGGAGTCTACTCTCCACCTGGT 33 >seq6703 Length=12229 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 12028 CAGATCTTCGTGAAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 11969 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| || || ||||| || |||||||| Sbjct 11968 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAG 11909 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 11908 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 11849 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 11848 CAGAAGGAGTCTACGCTGCACCTGGT 11823 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010 || |||||||| || || ||||| || ||| | ||||| || || || || || || Sbjct 12229 AAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAATGTGAAGCAGAAAATC 12170 Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 || ||||| || || ||||| || |||||||| || || ||||||||||| || ||||| Sbjct 12169 CAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTG 12110 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || || | || || ||| || ||| |||| || || || || || || || || Sbjct 12109 GAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACGCTTCACCTGGT 12051 >seq5117 Length=12130 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 11897 CAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 11838 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 11837 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 11778 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 11777 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 11718 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 11717 CAGAAGGAGTCTACTCTCCACCTGGT 11692 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 12125 CAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 12066 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 12065 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 12006 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 12005 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 11946 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 11945 CAGAAGGAGTCTACTCTCCACCTGGT 11920 >seq1268 Length=19578 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 6 CAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 65 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 66 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 125 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 126 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 185 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 186 CAGAAGGAGTCTACTCTCCACCTGGT 211 >seq1233 Length=22992 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || |||||||| || || ||||| || ||| Sbjct 553 CAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 494 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 493 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAG 434 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 433 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 374 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 373 CAGAAGGAGTCTACGCTTCACCTGGT 348 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 325 CAGATCTTCGTGAAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 266 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| || || ||||| || |||||||| Sbjct 265 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAG 206 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 205 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 146 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 145 CAGAAGGAGTCTACGCTTCACCTGGT 120 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || |||||||| || || ||||| || ||| Sbjct 4734 CAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4793 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || || || || ||||| || || ||||| || |||||||| Sbjct 4794 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAG 4853 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 4854 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 4913 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 4914 CAGAAGGAGTCTACGCTTCACCTGGT 4939 >seq779 Length=1215 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || |||||||| || || ||||| || ||| Sbjct 238 CAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 179 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 178 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAG 119 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 118 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 59 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 58 CAGAAGGAGTCTACTCTCCACCTGGT 33 >seq2466 Length=31792 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| || || ||||| ||||| ||||| ||| ||| | || || |||||||| || | Sbjct 25493 CAGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGACTCGATTGACAACGTCAAGCAGA 25552 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | || |||||||| || |||||||| || |||||||| || |||||||||||||| || | Sbjct 25553 AAATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTTATCTTCGCCGGCAAGC 25612 Query 178066 AGCTCGAAGATGGAAGGACTCT 178087 |||| || ||||| | ||||| Sbjct 25613 AGCTGGAGGATGGCCGCACTCT 25634 >seq10994 Length=1377 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || || ||||| || ||| Sbjct 1362 CAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTGGACGTGGAGCCGTCGGAC 1303 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 1302 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 1243 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || | || || ||| || Sbjct 1242 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAACATC 1183 Query 178104 CAAAA 178108 || || Sbjct 1182 CAGAA 1178 >seq6148 Length=6489 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| || || ||||| ||||| ||||| ||| ||| | || || || ||||| || | Sbjct 189 CAGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGACTCGATTGACAATGTCAAGCAGA 248 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | || |||||||| || |||||||| || |||||||| || || ||||||||||| || | Sbjct 249 AAATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTCGCCGGCAAGC 308 Query 178066 AGCTCGAAGATGGAAGGACTCT 178087 |||| || ||||| | ||||| Sbjct 309 AGCTGGAGGATGGCCGCACTCT 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203547653185794