Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6703 172 5e-38 seq5117 168 6e-37 seq1233 168 6e-37 seq1268 167 2e-36 seq10786 163 3e-35 seq779 159 3e-34 seq10994 136 4e-27 seq3516 129 5e-25 seq42 129 5e-25 seq4421 93.3 4e-14 >seq6703 Length=12229 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 11805 CCGCCACGAAGACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11864 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 11865 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 11924 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||||| || | | | | ||| || |||||| Sbjct 11925 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACATTGTCGATCGAGTCCGACGGCTCCAC 11983 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 11984 GTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATG 12032 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || ||||| ||||||||| ||||| |||||| Sbjct 12032 GCCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 12091 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 12092 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 12151 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| || | | | | ||| || ||||| Sbjct 12152 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACATTGTCGATCGAGTCCGACGGCTCCA 12210 Query 41814 CCTCCACCGTTATCGTTTT 41832 | |||| ||| ||||| || Sbjct 12211 CGTCCAGCGTGATCGTCTT 12229 >seq5117 Length=12130 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 11901 GCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 11960 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 11961 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 12020 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| | ||||| Sbjct 12021 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCA 12079 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 12080 CGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 12129 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 11674 CCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11733 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 11734 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 11793 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||||| ||| | | | | ||| | |||||| Sbjct 11794 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCAC 11852 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 11853 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 11901 >seq1233 Length=22992 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || ||||| ||||||||| ||||| |||||| Sbjct 101 GCCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 160 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 161 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 220 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| || | | | | ||| || ||||| Sbjct 221 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACATTGTCGATCGAGTCCGACGGCTCCA 279 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 280 CGTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATG 329 Score = 159 bits (176), Expect = 3e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || ||||| ||||||||| ||||| |||||| Sbjct 329 GCCGCCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 388 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 389 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 448 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| | ||||| Sbjct 449 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCA 507 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| ||||| || || || || ||||| ||||| |||||||| || Sbjct 508 CGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTT 559 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| || ||||| ||||||||| ||||| |||||| Sbjct 4957 CCACCGCGAAGGCGAAGCACCAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4898 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 4897 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 4838 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||||| || | | | | ||| || |||||| Sbjct 4837 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACATTGTCGATCGAGTCCGACGGCTCCAC 4779 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||| ||||| || || || || ||||| ||||| |||||||| || Sbjct 4778 GTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTT 4728 >seq1268 Length=19578 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 229 CCGCCACGAAGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 170 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 169 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 110 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||||| ||| | | | | ||| | |||||| Sbjct 109 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCAC 51 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 50 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 2 >seq10786 Length=3597 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 14 GCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 73 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 74 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 133 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| | ||||| Sbjct 134 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCA 192 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| ||||| || || ||||| ||||| ||||| |||||||| || Sbjct 193 CGTCCAGCGTGATCGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATCTT 244 >seq779 Length=1215 Score = 159 bits (176), Expect = 3e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 14 GCCGCCGCGCAGGCGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 73 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 74 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 133 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| | ||||| Sbjct 134 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCA 192 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| ||||| || || || || ||||| ||||| |||||||| || Sbjct 193 CGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCTT 244 >seq10994 Length=1377 Score = 136 bits (150), Expect = 4e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || || ||||| |||| || ||||||||||||||||| | Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | || | || ||||||||| |||||| ||||| || | Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACATTG 1294 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 1295 TCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACA 1354 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 1355 AAGATCTGCATG 1366 >seq3516 Length=19581 Score = 129 bits (142), Expect = 5e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| |||||||| || ||||||||||||||||| ||||| ||||| Sbjct 16852 CCACCACCGCGCAGACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 16793 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | Sbjct 16792 GACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 16733 Query 41753 GGAA 41756 |||| Sbjct 16732 GGAA 16729 >seq42 Length=28877 Score = 129 bits (142), Expect = 5e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| |||||||| || ||||||||||||||||| ||||| ||||| Sbjct 26129 CCACCACCGCGCAGACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 26070 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | Sbjct 26069 GACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 26010 Query 41753 GGAA 41756 |||| Sbjct 26009 GGAA 26006 >seq4421 Length=75205 Score = 93.3 bits (102), Expect = 4e-14 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690 ||||||| |||||||| || | |||||||||||| || | | ||| ||| |||| Sbjct 8356 CACCGCCTCCGCGTAGCCGCAGCACCAGATGCAGGATGTTTCCATTCACAATCGCGTAGT 8297 Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-C 41749 | ||||| ||||| || || |||||| || |||||||||| || | |||||| ||||| Sbjct 8296 CCGAGAGAGTGCGATCATCTTCGAGCAGCCTGCCGGCGAAGATGATGCGCTGCTGGTCTG 8237 Query 41750 GCGGGA 41755 |||||| Sbjct 8236 GCGGGA 8231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462235226501200